PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv3_048710_ekeq.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

bHLH

Protein Properties

Length: 285aa MW: 31994.3 Da PI: 5.5159

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv3_048710_ekeq.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.6	3.4e-06	172	195	7	30
HHHHHHHHHHHHHHHHHHCTSCCC CS HLH 7 erErrRRdriNsafeeLrellPka 30 E+rRR+ri ++++ L l+P + Bv3_048710_ekeq.t1 172 TSEQRRRKRISDKLQALENLVPYS 195 57********************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	6.8E-5	173	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MSEQVSCFKW GTSSSSINAS SCSCFSGFNT TGNLEAALYD QVDNVAMNDT SAENFDALHN 60 WVDNQLADLA KHDHNNNEDN VSQDVPELDS DDDHHDHSVD DFHEVESENV NLDTKGKEVF 120 EPEHTFSLNE DQQGATWKTS KTRGKILVAG GARVPRGAST LLRTLFNIFK RTSEQRRRKR 180 ISDKLQALEN LVPYSHKMMV GWHGQSQLQQ AAYATQTFVP MMMRTDMQIG AINRSGVTGA 240 QPIYQMRAIS PNLYQQPPNV YYPSTTASFE PTYCPPTTRQ LQPHS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010671201.1	1e-169	PREDICTED: uncharacterized protein LOC104888068
STRING	XP_010671201.1	1e-168	(Beta vulgaris)