PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv3_049250_daej.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

ERF

Protein Properties

Length: 243aa MW: 26968.8 Da PI: 6.7232

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv3_049250_daej.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.1	2.2e-18	89	139	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrd + ng r++lg+f+t+e Aa a+++a+ + +g Bv3_049250_daej.t1 89 SYRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDTPEAAALAYDQAAISTRG 139 69*****.******44465..********************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.50E-19	88	148	No hit	No description
PROSITE profile	PS51032	22.642	89	147	IPR001471	AP2/ERF domain
SMART	SM00380	1.9E-36	89	153	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.1E-30	89	148	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.97E-22	89	148	IPR016177	DNA-binding domain
Pfam	PF00847	2.5E-12	89	139	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.5E-10	90	101	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.5E-10	113	129	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MNSSSSETCS FYSSSPETFS WEEFNLPNIL PLDENEMTSY ARTTTIPGAV SSSSSWRRVG 60 VKEEEVSSSM SSSIIKEEKN TRRGEGEKSY RGVRKRPWGK YAAEIRDSTR NGVRVWLGTF 120 DTPEAAALAY DQAAISTRGS MAVLNFPEEV VKESLKEMNY EFGNGCSPVL VMKNRLSLRK 180 NKSNNSMCKK NKGKINKGSS SSLENTNTNT NTNNNSSNVF VFEDLGSDYL EQLLMASESI 240 SNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-27	90	149	15	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269\|PubMed:23057995, ECO:0000269\|PubMed:28733419}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269\|PubMed:28733419}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010671217.1	1e-176	PREDICTED: ethylene-responsive transcription factor 1B
Swissprot	A0A3Q7I5Y9	2e-55	ERFC3_SOLLC; Ethylene-response factor C3
TrEMBL	A0A0K9Q8L3	6e-77	A0A0K9Q8L3_SPIOL; Uncharacterized protein
STRING	XP_010671217.1	1e-176	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23240.1	2e-46	ethylene response factor 1

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Pirrello J, et al. Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene. BMC Plant Biol., 2012. 12: p. 190 [PMID:23057995] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419]