PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_049280_qgjt.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 142aa    MW: 16390 Da    PI: 6.5274
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_049280_qgjt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.16.8e-211768256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr+++ +g+++AeIrdp+++g  +r++lg+f+tae Aa+a+++a+ +l+g+
  Bv3_049280_qgjt.t1 17 RYRGVRRRP-WGKFAAEIRDPTKQG--ARVWLGTFDTAEAAARAYDRAAFNLRGH 68
                        6********.**********98865..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-151768IPR001471AP2/ERF domain
SMARTSM003801.3E-371781IPR001471AP2/ERF domain
CDDcd000182.38E-181776No hitNo description
PROSITE profilePS5103224.9481775IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-321777IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-231776IPR016177DNA-binding domain
PRINTSPR003671.4E-111829IPR001471AP2/ERF domain
PRINTSPR003671.4E-114157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MEGTSRGKQH EGGEDVRYRG VRRRPWGKFA AEIRDPTKQG ARVWLGTFDT AEAAARAYDR  60
AAFNLRGHLA TLNFPNEYYA KLDPIHHLPS SSRYYNRTVD YSTSSTPSMA TGPRQDRQVI  120
EFEYLDDKVL EDMLRRSEEE DD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-3161293114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671052.11e-102PREDICTED: ethylene-responsive transcription factor ERF098
SwissprotQ9LTC51e-44ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0K9QXI61e-68A0A0K9QXI6_SPIOL; Uncharacterized protein
STRINGXP_010671052.11e-102(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.18e-34ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]