PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_050780_usim.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NAC
Protein Properties Length: 637aa    MW: 71141.2 Da    PI: 5.7726
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_050780_usim.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.42.4e-52221501128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lp GfrF+Ptd el+++yL+ k++gk+ e+  +i+evdi++vePwdLp  + +k+ ++ew+fF++rd+ky++g+r+nrat++gyWkatgkd
  Bv3_050780_usim.t1  22 LPLGFRFKPTDVELIDHYLRLKINGKDKEV-ACITEVDICRVEPWDLPglSFIKSMDHEWFFFCPRDRKYPNGQRSNRATEAGYWKATGKD 111
                         699************************999.88***************6447888999********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++s+k  l+g+kktLvfykgrapkg++t+Wv+heyr 
  Bv3_050780_usim.t1 112 RSIKSRKMGLIGMKKTLVFYKGRAPKGQRTHWVIHEYRT 150
                         *************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-5711173IPR003441NAC domain
PROSITE profilePS5100555.0322173IPR003441NAC domain
PfamPF023657.2E-2623149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MGALAVEKSG KMEALAMPFE RLPLGFRFKP TDVELIDHYL RLKINGKDKE VACITEVDIC  60
RVEPWDLPGL SFIKSMDHEW FFFCPRDRKY PNGQRSNRAT EAGYWKATGK DRSIKSRKMG  120
LIGMKKTLVF YKGRAPKGQR THWVIHEYRT TLQELDGSHP GQGAFVLCRL FKKADDVKPD  180
DNDDGSHTEE VETNICSPNP TIISQEDIQS EPAVVQASPL SVEQSVEQQM ISENCVVKTS  240
DSTTSEALYP DRTQANVEMM HEVDSHVNEP NYFYDPPEGY FKWPTMPLNQ GPVGMDDLFP  300
ADIGDGRSEL HFQDNNGRDP IADFLDSVLI NPDMPVYEEA VGQGPLSIGG DMWRNSYMKE  360
SGSCSGSDVD VVRYQGDVGY IRCITGNNKN CNDPKGNKEI IQQHTLADDD DIFSEASLDR  420
FLNIPSVKAE DGNQFVGNNG IIIRSHMRGR QMQSSNFGEQ GSAPRRVRLQ VNNDEEKHLE  480
FAVTERSCSP AAFDLSSTIA PSEDVISLAD LGENAAGHNG EVVETGIKIR THLQRSRFGA  540
SKSVQQGTAH RRIRLQKRSS NKFKVAEVKP LVAEVRNESE KVVEKQCAGN SDGGPDQKCS  600
FVKKSMMVHM VKVVMVVFLF MACIGLWIAR NVSILSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-432217615171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671302.10.0PREDICTED: protein NTM1-like 9 isoform X1
TrEMBLA0A0J8FKL60.0A0A0J8FKL6_BETVU; Uncharacterized protein
STRINGXP_010671302.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.15e-84NAC 014