PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv3_051000_zcce.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

MYB_related

Protein Properties

Length: 721aa MW: 79802.3 Da PI: 4.5623

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv3_051000_zcce.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.9	1.3e-09	569	612	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r rWT+++ el+++++ q+G++ + + + ++ g+t+ ++k+++ k Bv3_051000_zcce.t1 569 RARWTKQDTELFYKGISQFGSD-LSMVQQLFP-GLTRHHIKLKYKK 612 569*****************.*****.*********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	1.9E-25	562	646	No hit	No description
SMART	SM00717	0.0032	568	616	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.45E-7	571	618	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence Send to blast
MSNTIYEVFA MIIINVDDPF SEPTVVKAPT AGRFQPKAKP RPKRGPLPAV KSTKEPSVTS 60 ISQDSVSVQS NGNVEKKSDA PISSSFTDVD SLGKPPKDGN LSTEAREVSG SAVTGDLEID 120 VSIPVGGINL SVDSSTELQL PPNIVGLSPN AAGFPAETPT LDASNVQNEG ELSGFPDVSF 180 IDAPSLKPCK PQTVHDQSID KTLQDSESYK GSFVCDDADI QIDVEQLGVG DFSCFDSIDM 240 MSEGAAASGK RAVKFQPKPK AQSDRLKAPT EAGSHHPHGS ELHSETLHLA RDSSIHAGQP 300 DTVSDLSHMR LDSEFSIHSS VYQADFVGSE ETDQFMTADL PQQGEEHHGE DKSYDALDSS 360 AKSVDEGFLS GFDVNENGYE LFDGINGEFH DNINSHNEAP YGSASNRDEN NDVVHLAEES 420 SQKKRPRKSK KVASENDKPA RRRRKATQNP AESTEKPPKK FPRGTRRKRC VDKSLLEAPE 480 DELDLQRVPI RELILLAEHK ERQAKKEAAT TLPSLTSERT DNTLSEDRPY DDEGYGFDQD 540 DAFDNPSTSE VQKDTGYFNY QSFMQREPRA RWTKQDTELF YKGISQFGSD LSMVQQLFPG 600 LTRHHIKLKY KKEERQNPMR LHDALCSRTQ DLSHFELVIG RLKEQAARDG KADIDDSVYE 660 AGEAEGPEEV VNSHEDVAKP EQNEEDKVAD QEPDKHLAES PPKSYHSEEE DFDWSEYKSE 720 L

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence Send to blast

MSNTIYEVFA MIIINVDDPF SEPTVVKAPT AGRFQPKAKP RPKRGPLPAV KSTKEPSVTS  60
ISQDSVSVQS NGNVEKKSDA PISSSFTDVD SLGKPPKDGN LSTEAREVSG SAVTGDLEID  120
VSIPVGGINL SVDSSTELQL PPNIVGLSPN AAGFPAETPT LDASNVQNEG ELSGFPDVSF  180
IDAPSLKPCK PQTVHDQSID KTLQDSESYK GSFVCDDADI QIDVEQLGVG DFSCFDSIDM  240
MSEGAAASGK RAVKFQPKPK AQSDRLKAPT EAGSHHPHGS ELHSETLHLA RDSSIHAGQP  300
DTVSDLSHMR LDSEFSIHSS VYQADFVGSE ETDQFMTADL PQQGEEHHGE DKSYDALDSS  360
AKSVDEGFLS GFDVNENGYE LFDGINGEFH DNINSHNEAP YGSASNRDEN NDVVHLAEES  420
SQKKRPRKSK KVASENDKPA RRRRKATQNP AESTEKPPKK FPRGTRRKRC VDKSLLEAPE  480
DELDLQRVPI RELILLAEHK ERQAKKEAAT TLPSLTSERT DNTLSEDRPY DDEGYGFDQD  540
DAFDNPSTSE VQKDTGYFNY QSFMQREPRA RWTKQDTELF YKGISQFGSD LSMVQQLFPG  600
LTRHHIKLKY KKEERQNPMR LHDALCSRTQ DLSHFELVIG RLKEQAARDG KADIDDSVYE  660
AGEAEGPEEV VNSHEDVAKP EQNEEDKVAD QEPDKHLAES PPKSYHSEEE DFDWSEYKSE  720
L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	422	444	KKRPRKSKKVASENDKPARRRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010671339.1	0.0	PREDICTED: uncharacterized protein LOC104888156
TrEMBL	A0A0J8CSA5	0.0	A0A0J8CSA5_BETVU; Uncharacterized protein
STRING	XP_010671339.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	5e-44	MYB_related family protein