PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv3_051670_coxe.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

FAR1

Protein Properties

Length: 214aa MW: 24720 Da PI: 8.2886

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv3_051670_coxe.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.8	1.4e-07	56	118	47	88
FAR1 47 k....................tekerrtraetrtgCkaklkvkkekdgkwevtkleleH.nHe 88 + ++rr r++++++C a++ + + dg+w+v k +leH nH+ Bv3_051670_coxe.t1 56 NkdahkaglqvsdevgaesirVATSRRLRKSKKCECPAMMYASVNGDGEWVVWKTVLEHkNHN 118 134445566666666666666678999********************************7886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-5	53	118	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MAIERDEDIT PRSTVDNDMC TQCSNVGGLH RRRKINVIWK CECAEKPNIN RNRRQNKDAH 60 KAGLQVSDEV GAESIRVATS RRLRKSKKCE CPAMMYASVN GDGEWVVWKT VLEHKNHNAT 120 PGEWKQASLH IQATLKPHLR RSSANEVDVG LLENDAMTAA LRDVICDSFS GDEFERRWKI 180 VIDQYGLVEN AWLTRLYENR FMWVPIYNKD TFWA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	86	RRLRKSK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010671418.1	8e-99	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A0K9R1T1	3e-55	A0A0K9R1T1_SPIOL; Uncharacterized protein
STRING	XP_010671418.1	3e-98	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	7e-12	FAR1-related sequence 6