PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_052580_wurf.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 391aa    MW: 43178.7 Da    PI: 4.5213
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_052580_wurf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-19132181255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  Bv3_052580_wurf.t1 132 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 181
                         89*******.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.2E-30131189IPR001471AP2/ERF domain
PfamPF008471.1E-12132181IPR001471AP2/ERF domain
CDDcd000182.83E-33132189No hitNo description
SMARTSM003803.4E-39132195IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-21132189IPR016177DNA-binding domain
PROSITE profilePS5103223.947132189IPR001471AP2/ERF domain
PRINTSPR003674.6E-10133144IPR001471AP2/ERF domain
PRINTSPR003674.6E-10155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MMDYTNMLCP VKYTEHRRVT KKHNSVKALK KSSSCTKPPR VVRVSVVDND ATDSSSDEES  60
ELFGRHRVRR YLNEIVIEPA LSATAATPPP TLAQAVVTPS CNAKKGGSKK KSTNTGTATQ  120
GATLTTTGGV RKFRGVRQRP WGKWAAEIRD PARRVRLWLG TYDTAEEAAM VYDNAAIKLR  180
GPDALTNFAT PPPREPPPPV VVEPHAPSTS GGYESGDESV SHNILCSPTS VLHFRGGSTD  240
EDTFRFKQDD NESLPPPIQE SSLSVSNSII SNSSSSSGLE ECQGESSSTI GDFLDTPFLN  300
DFFNFESPEP MIFEDSKPME NLFTIYDEND QLLQHQFDDF GDMFVDSFID DLDFNTMDNS  360
NNNYSSSNLL QVDDYFQDIN DIFASDPLVA L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21131188159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671529.10.0PREDICTED: ethylene-responsive transcription factor CRF4
TrEMBLA0A0K9QW281e-152A0A0K9QW28_SPIOL; Uncharacterized protein
STRINGXP_010671529.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-47cytokinin response factor 4