PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_053280_czdf.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB_related
Protein Properties Length: 295aa    MW: 32286.5 Da    PI: 8.4695
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_053280_czdf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.4e-1267111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Bv3_053280_czdf.t1  67 RESWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 111
                         789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.93E-1661117IPR009057Homeodomain-like
PROSITE profilePS5129413.75862116IPR017930Myb domain
TIGRFAMsTIGR015572.1E-1865114IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.9E-665117IPR009057Homeodomain-like
SMARTSM007179.6E-1066114IPR001005SANT/Myb domain
PfamPF002495.4E-1067111IPR001005SANT/Myb domain
CDDcd001671.12E-769112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MVSMNPNSPE GFYLDSNGAA LPGLNPFSAP PPENSPTTAT NTTSSSPTDD SCNSKKIRKP  60
YTITKSRESW TEPEHDKFLE ALQLFDRDWK KIEAFIGSKT VIQIRSHAQK YFLKVQKSGS  120
NEHLPPPRPK RKAAHPYPQK APKIVPQATG SAQPSSLLLE PGLQRPEATS VPLCPNNAAV  180
VSTWAPNTQP SLAKGDMKSV GPPIANNCSS STESTAMART AGEMNEAVKH APPLRVLPDF  240
AQVYSFIGSV FDPEVKGHLQ RLKKMDPIDV ETVLLLMRNL SINLTSPDFE DHENH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671616.10.0PREDICTED: protein REVEILLE 6 isoform X2
SwissprotQ8H0W31e-102RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A0K9RE611e-173A0A0K9RE61_SPIOL; Uncharacterized protein
STRINGXP_010671614.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-87MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]