PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv3_055090_xdwj.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

C2H2

Protein Properties

Length: 695aa MW: 77774.1 Da PI: 7.2973

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv3_055090_xdwj.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00042	77	98	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F + +++rH+r+H Bv3_055090_xdwj.t1 77 KCEKCSREFCSTISYRRHMRLH 98 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.577	76	98	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	78	98	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 695 aa Download sequence Send to blast
MPLPKLKASG AVDTMKVDDG NDSLDTFIRQ AIGKEPFLSF SRANDSPVQW IQLLHALDQQ 60 DLPGWPLLSP LKVQMQKCEK CSREFCSTIS YRRHMRLHRR NLNLDKDSTM KNRGLLQAFW 120 DKLCPEEAME IMSFNDISLE GVSGSSIVKA LTSFIRKPGF SSLPQTYVKS GSALLDIVQG 180 RPSRFPISSQ ELFGILDDAS EKTFLCAGTA ESLQKYVFDG EAGKIGLEMR NLVACTSFLV 240 EQKLVKACLA DKDAEALRYQ KLLVEEEEAA QKRQAAILEK KRQKKLRQKE QRAKEQGSAE 300 TDDSPEDSYP SPPTSSAVDT PEYILEVPEV PHTSVLSSES FQMIDVEADR AKSYEHEYLD 360 LDSSHNVYPD MDSYQNVENR TLHRSGRRHT ANSRWQAPKL QRTSNGFHTG HNYQAPKLGA 420 AQKHASSRDS RVTTNGIKVW TPKPKSDNDE ESYRTRLQIE APNVQDKKHE VLIGSISVTL 480 GNCSNLQHDE YLGRALLRSA SELSTPDIDG IHERPVKPEA AQSTANRSTV KLWRPVSRND 540 NGGQPPSQNG VDACEVGDTR NNSDEVQQTC EAQTCSNFHE ENHASVDGGL QRGSGFSSHV 600 AEAFLAKRWK EAIASYHVKL VLPDARPPEY PQVHCNSQET LYASKLEQRG ILHSAENRLE 660 SYTNLELSAA VKSKTRAKPE KGSKVKYIPK QRSAY

Sequence ? help Back to Top

Protein Sequence Length: 695 aa Download sequence Send to blast

MPLPKLKASG AVDTMKVDDG NDSLDTFIRQ AIGKEPFLSF SRANDSPVQW IQLLHALDQQ  60
DLPGWPLLSP LKVQMQKCEK CSREFCSTIS YRRHMRLHRR NLNLDKDSTM KNRGLLQAFW  120
DKLCPEEAME IMSFNDISLE GVSGSSIVKA LTSFIRKPGF SSLPQTYVKS GSALLDIVQG  180
RPSRFPISSQ ELFGILDDAS EKTFLCAGTA ESLQKYVFDG EAGKIGLEMR NLVACTSFLV  240
EQKLVKACLA DKDAEALRYQ KLLVEEEEAA QKRQAAILEK KRQKKLRQKE QRAKEQGSAE  300
TDDSPEDSYP SPPTSSAVDT PEYILEVPEV PHTSVLSSES FQMIDVEADR AKSYEHEYLD  360
LDSSHNVYPD MDSYQNVENR TLHRSGRRHT ANSRWQAPKL QRTSNGFHTG HNYQAPKLGA  420
AQKHASSRDS RVTTNGIKVW TPKPKSDNDE ESYRTRLQIE APNVQDKKHE VLIGSISVTL  480
GNCSNLQHDE YLGRALLRSA SELSTPDIDG IHERPVKPEA AQSTANRSTV KLWRPVSRND  540
NGGQPPSQNG VDACEVGDTR NNSDEVQQTC EAQTCSNFHE ENHASVDGGL QRGSGFSSHV  600
AEAFLAKRWK EAIASYHVKL VLPDARPPEY PQVHCNSQET LYASKLEQRG ILHSAENRLE  660
SYTNLELSAA VKSKTRAKPE KGSKVKYIPK QRSAY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	278	285	EKKRQKKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010671848.1	0.0	PREDICTED: uncharacterized protein LOC104888530 isoform X1
TrEMBL	A0A0K9RXQ1	0.0	A0A0K9RXQ1_SPIOL; Uncharacterized protein
STRING	XP_010671848.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-122	C2H2-like zinc finger protein