PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_056570_rqwc.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB_related
Protein Properties Length: 122aa    MW: 13582.5 Da    PI: 9.9648
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_056570_rqwc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.81e-12752247
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        ++WT+eE++ ++ + + lG+g Wk Ia++    R++ q+ s+ qky
  Bv3_056570_rqwc.t1  7 NPWTKEEHQSFLMGLQALGKGKWKGIAKKYVISRSPSQVASHAQKY 52
                        69*****************************89************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.922157IPR017930Myb domain
SuperFamilySSF466891.08E-14556IPR009057Homeodomain-like
SMARTSM007171.3E-8555IPR001005SANT/Myb domain
TIGRFAMsTIGR015577.9E-16655IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.0E-10751IPR009057Homeodomain-like
PfamPF002493.1E-11752IPR001005SANT/Myb domain
CDDcd001671.43E-8853No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MSDNAGNPWT KEEHQSFLMG LQALGKGKWK GIAKKYVISR SPSQVASHAQ KYFIRLAASE  60
KKKIRPSVFD ANLQEPQVDV DGNGQKKFVV GSCTPIMLYS YGPVTVNFSH ETYMYLPQGS  120
NP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672339.16e-88PREDICTED: transcription factor MYB1R1
SwissprotQ9FKF94e-26M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A1J6IGF32e-27A0A1J6IGF3_NICAT; Transcription factor myb1r1
TrEMBLA0A1S3YS014e-27A0A1S3YS01_TOBAC; transcription factor MYB1R1-like isoform X2
TrEMBLA0A1S3YS954e-27A0A1S3YS95_TOBAC; transcription factor MYB1R1-like isoform X1
TrEMBLA0A1S4AZ373e-27A0A1S4AZ37_TOBAC; transcription factor MYB1R1-like
TrEMBLA0A1U7WU953e-27A0A1U7WU95_NICSY; transcription factor MYB1R1-like
STRINGXP_010672339.12e-87(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.11e-28MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]