PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_057390_eygn.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family FAR1
Protein Properties Length: 214aa    MW: 24783 Da    PI: 9.8796
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_057390_eygn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1928e-2950137291
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                         +Yn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r  +k++  k  r+raetr+gC+a++ v+k+++gkw+vtk+++eH+H+l+p
  Bv3_057390_eygn.t1  50 YYNTYATRVGFVIRVSKLSRSRRDGSAIGRALVCNKEGYRMADKRE--KVVRQRAETRVGCRAMILVRKMSSGKWVVTKFVKEHTHPLTP 137
                         8*****************************************9988..999************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-2650137IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MGGSSVEGGQ SQDDRMNEEF SEKEVIPVGE PLNEPFVGQE FDSEAAAHAY YNTYATRVGF  60
VIRVSKLSRS RRDGSAIGRA LVCNKEGYRM ADKREKVVRQ RAETRVGCRA MILVRKMSSG  120
KWVVTKFVKE HTHPLTPGKG RKDLIFEQYP NEHDKIRELS QQLSIERKRA ATYKRHLEMV  180
FEHIEEHNQS LSKKIQNIVD NVREFDSREK ENRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019104164.11e-159PREDICTED: protein FAR1-RELATED SEQUENCE 6 isoform X2
TrEMBLD7U1S11e-124D7U1S1_VITVI; Uncharacterized protein
STRINGXP_010672213.11e-158(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.25e-91FAR1 family protein