PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_057590_qsmh.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 145aa    MW: 16471.9 Da    PI: 10.2286
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_057590_qsmh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.23.5e-1953142498
                         E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                  B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                         +++++++lk g + +p +fa+eh++ ++++ ++++ de+g++W++ l  rk++++++++  W++F ++n+L +gD ++F+l+++ e  +v+
  Bv3_057590_qsmh.t1  53 TFVQPSTLKWGGMAIPTDFAKEHDLANNCG-EVIILDERGKTWQLSL--RKYKRSVYIG-RWSHFHRQNDLSAGDCLTFELINTGEL-PVM 138
                         5789999999*************9998887.9***************..******9999.9********************985444.777 PP

                         EEE- CS
                  B3  95 kvfr 98 
                         k++r
  Bv3_057590_qsmh.t1 139 KFYR 142
                         7766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-1947143IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-1947141IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.47950143IPR003340B3 DNA binding domain
SMARTSM010191.7E-1750144IPR003340B3 DNA binding domain
PfamPF023624.1E-1753142IPR003340B3 DNA binding domain
CDDcd100171.80E-1863142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MSKASTSNAC PITSTDGIHK NGKRGLKRIE DIHKACSATK ATFKPRGHPY WRTFVQPSTL  60
KWGGMAIPTD FAKEHDLANN CGEVIILDER GKTWQLSLRK YKRSVYIGRW SHFHRQNDLS  120
AGDCLTFELI NTGELPVMKF YRTVS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672239.21e-101PREDICTED: B3 domain-containing protein REM9-like
STRINGXP_010672239.11e-105(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.17e-13B3 family protein