PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_057610_ycxm.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 110aa    MW: 12734.7 Da    PI: 8.8409
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_057610_ycxm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.39.3e-2113102192
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                         f++++++s+ lk g ++lp +fa+e+++ + +  ++tl d+sg+ W+++l+y++++ + v  +GW++F  +ngLkegD vvF+l+   ++ 
  Bv3_057610_ycxm.t1  13 FCQTTVKSYCLKWGGIILPMNFAKENDLAN-KWCDITLIDQSGKAWQLQLRYTNRKWASVYIGGWSKFHLENGLKEGDHVVFELIAVgEN- 101
                         88999*********************6553.4448*****************77766645555********************9974333. PP

                         .. CS
                  B3  91 el 92 
                          +
  Bv3_057610_ycxm.t1 102 -P 102
                         .3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-171199IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-2011104IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-1613110IPR003340B3 DNA binding domain
PfamPF023621.5E-1813104IPR003340B3 DNA binding domain
PROSITE profilePS5086313.59213110IPR003340B3 DNA binding domain
CDDcd100171.12E-1813108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MEKVTFNFRG HPFCQTTVKS YCLKWGGIIL PMNFAKENDL ANKWCDITLI DQSGKAWQLQ  60
LRYTNRKWAS VYIGGWSKFH LENGLKEGDH VVFELIAVGE NPTMNFYKLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672241.15e-79PREDICTED: B3 domain-containing protein REM14
STRINGXP_010672241.12e-78(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31615.12e-12B3 family protein