PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_058480_taej.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 135aa    MW: 14949.2 Da    PI: 9.1176
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_058480_taej.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.71.3e-0533721054
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        + R +++ +++ +L++l+ +      +K + a++L +A+eYI+ L
  Bv3_058480_taej.t1 33 KERKEKLGEKITTLQQLVSPY-----GKTDTASVLLEAMEYINFL 72
                        778899999*********999.....9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.63E-62177No hitNo description
Gene3DG3DSA:4.10.280.107.4E-102281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-122383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.9472372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00222978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MTETKRSVRP TDQDSFTSVA SKRQKIDISM SSKERKEKLG EKITTLQQLV SPYGKTDTAS  60
VLLEAMEYIN FLHEQVKVLS APYLNNTPVT KIEEPLQYSL RSKGLCLVPI ECTAGLAGSN  120
GADIWAPIKT GSPRF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019104186.18e-97PREDICTED: transcription factor bHLH113 isoform X1
SwissprotQ7XJU29e-55BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A0K9RQ201e-84A0A0K9RQ20_SPIOL; Uncharacterized protein
STRINGXP_010672412.13e-96(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.54e-57bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]