PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_060310_cykg.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 305aa    MW: 31793.7 Da    PI: 9.5282
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_060310_cykg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.6e-073458226
                        -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                        k ++C  f+ t  C++G++C+F H 
  Bv3_060310_cykg.t1 34 KSKPCTKFFSTSGCPFGESCHFLHH 58
                        7789********************6 PP
2zf-CCCH28.52.5e-0994119227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         kt+lC+ ++    CkyGd+C+FaHg+
  Bv3_060310_cykg.t1  94 KTRLCNKYSSAEGCKYGDKCHFAHGE 119
                         8***********************96 PP
3zf-CCCH33.28.7e-11272296126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         y+t+lC +f + G C +GdrC+FaHg
  Bv3_060310_cykg.t1 272 YRTKLCENFTK-GSCTFGDRCHFAHG 296
                         89*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.0093260IPR000571Zinc finger, CCCH-type
SMARTSM003560.0333259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-63359IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-83458IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-53458IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.4692120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-892123IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-492119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-1493124IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-794119IPR000571Zinc finger, CCCH-type
SMARTSM003224.6E-11163233IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.108.3E-16163233IPR004088K Homology domain, type 1
PROSITE profilePS5008414.403164228IPR004088K Homology domain, type 1
SuperFamilySSF547912.48E-15166257IPR004088K Homology domain, type 1
PfamPF000131.3E-11166229IPR004088K Homology domain, type 1
CDDcd001055.47E-15166229No hitNo description
Gene3DG3DSA:4.10.1000.105.3E-16268302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-8270301IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-7271297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.605271298IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-8272296IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDARKRRHDA GAANANGGFK KFKQESDSSG IGSKSKPCTK FFSTSGCPFG ESCHFLHHVP  60
GGYNAVSQMM NLPTISRVAP PPPQAPNGSA ATVKTRLCNK YSSAEGCKYG DKCHFAHGEW  120
ELNKPVVPSF DDPRAMGGLP MHGRFLGRNE SHVPAALPAG FGASATAKIS VDASLAGAII  180
GKSGVNSKQI CRQTGVKLSI RDHDSDPTKR NIELEGNFDQ IKMASDMVHD LVASVGANAP  240
MKASGGPGGH GPGGHGPGGH GSAAHGPASS NYRTKLCENF TKGSCTFGDR CHFAHGAAEL  300
RKSGV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672666.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-110C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A0K9RDP71e-167A0A0K9RDP7_SPIOL; Uncharacterized protein
STRINGXP_010672666.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.15e-76C3H family protein