PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv3_060800_jzfr.t2

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

G2-like

Protein Properties

Length: 373aa MW: 41932.4 Da PI: 6.7919

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv3_060800_jzfr.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.5	3.6e-34	35	89	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerFveav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl Bv3_060800_jzfr.t2 35 KPRLKWTPDLHERFVEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 89 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.849	32	92	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.7E-32	33	90	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.12E-17	34	90	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.0E-23	35	90	IPR006447	Myb domain, plants
Pfam	PF00249	5.5E-10	37	88	IPR001005	SANT/Myb domain
Pfam	PF14379	4.3E-24	134	180	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MYPSPRISAP QERQLFLQGG NGSRDSNLVL STDAKPRLKW TPDLHERFVE AVNQLGGADK 60 ATPKTVMKLM GIPGLTLYHL KSHLQKYRLS KNIHGQTSSG ANKTVVMSSD KMQETSPSHT 120 SSINIAHQPN KNLHINEALQ MQIEVQRRLH EQLEVQRRLQ LRIEAQGKYL QAVLEKAQET 180 LGKQNIGVVG LEAAKLQLSE LVSKVSNQCL NLAFAEMAEE QQGLCPKQQI QPHKPMGDCS 240 LDSCLTSCDG PQLREQDMHN SELGLRPYND TRFLEGNEFN ENLKEHATIL FPTTTQQDTA 300 KMMFRMEGAC SDLSMSVGIR RDTRDELEQS TFQLDNKNYK LGSFSGELDL NARDEPDVPS 360 TIRHLDLNGL SWT

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MYPSPRISAP QERQLFLQGG NGSRDSNLVL STDAKPRLKW TPDLHERFVE AVNQLGGADK  60
ATPKTVMKLM GIPGLTLYHL KSHLQKYRLS KNIHGQTSSG ANKTVVMSSD KMQETSPSHT  120
SSINIAHQPN KNLHINEALQ MQIEVQRRLH EQLEVQRRLQ LRIEAQGKYL QAVLEKAQET  180
LGKQNIGVVG LEAAKLQLSE LVSKVSNQCL NLAFAEMAEE QQGLCPKQQI QPHKPMGDCS  240
LDSCLTSCDG PQLREQDMHN SELGLRPYND TRFLEGNEFN ENLKEHATIL FPTTTQQDTA  300
KMMFRMEGAC SDLSMSVGIR RDTRDELEQS TFQLDNKNYK LGSFSGELDL NARDEPDVPS  360
TIRHLDLNGL SWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-21	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-21	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-21	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-21	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-21	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-21	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-21	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-21	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-21	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-21	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-21	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-21	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010672723.1	0.0	PREDICTED: myb-related protein 2-like isoform X4
Swissprot	Q9SQQ9	1e-114	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A0K9RQP5	0.0	A0A0K9RQP5_SPIOL; Uncharacterized protein
STRING	XP_010672720.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-117	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]