PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv3_060900_tcwq.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

bHLH

Protein Properties

Length: 334aa MW: 37057.7 Da PI: 6.1904

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv3_060900_tcwq.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.5e-09	178	225	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + ++++++Lq Bv3_060900_tcwq.t1 178 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQYLQ 225 8***********************9....899999***********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-15	172	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.91E-8	172	229	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.1E-15	174	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.437	174	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-6	178	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-7	180	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MDSIAGTEIR SVNYPEFGDE FQKLIIAPEN GNSFTALLEL PPTQAMELLT DDGGGGNGGG 60 EVVKRHRVSA YNHSLSSLPA FPSNRALIER AAKYSVFATE DSPEFKVKSE PLDSCSNPNS 120 SDPTAGSESD KEKEKPLKRK EREKKGKGLT KKTKTTSDDG EKLPYVHVRA RRGQATDSHS 180 LAERARREKI NARMKLLQEL VPGCNKISGT ALVLDEIINH VQYLQRQVEY LSMRLAAVNP 240 KIDFNLDSLI SGGTESMVDC NLPNMAMPLM WPEIHVTGDR PQFQQQWQLE SLSQPVWVKE 300 ENNRNVVASE NSLMTYDSPG NSASLHSSQL KMEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010672733.1	0.0	PREDICTED: transcription factor bHLH48
Swissprot	Q3EAI1	5e-78	BH060_ARATH; Transcription factor bHLH60
TrEMBL	A0A0K9QKV5	1e-176	A0A0K9QKV5_SPIOL; Uncharacterized protein
STRING	XP_010672733.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	4e-86	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]