PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_061310_pcyo.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 673aa    MW: 74127.7 Da    PI: 6.4189
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_061310_pcyo.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.2e-07280300526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C++f++ G C++Gd C +aHg
  Bv3_061310_pcyo.t1 280 PCPDFRK-GACRRGDMCEYAHG 300
                         8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002045.93E-1412135No hitNo description
SuperFamilySSF484032.64E-1520141IPR020683Ankyrin repeat-containing domain
PfamPF127968.9E-1022124IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.6E-1657144IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.73357150IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00515787IPR002110Ankyrin repeat
PROSITE profilePS5008812.07592127IPR002110Ankyrin repeat
SMARTSM002489.3E-492124IPR002110Ankyrin repeat
SMARTSM003564.0E-6275301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4279302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582280302IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-5280300IPR000571Zinc finger, CCCH-type
SMARTSM0035640310333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MNHLTVQTVD TFSSLLEVSA NNDVEGFKRL IEDDPSGLDE VGLWYVRKKG SKQMVYQHRT  60
PLMVASMYGS MDVLKLILSL AITDVNRSCG DDKSTALHCA ASGGSVNAVD AVKLLLEAGA  120
DHNALDADGH RPFDVIMVSP KQNDVKYALE ELLAGHGSIS ERILRLSTTT SNSNSPPLSS  180
SPGNGSPSSY SDSPPSPINS KFDDPQAISY TSEKKEYPID PSIPDIKNSI YATDEFRMYS  240
FKIRPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPDFRKGACR RGDMCEYAHG  300
VFECWLHPAQ YRTRLCKDGP SCSRRVCFFA HATDELRPLY VSTGSAVPSP RSSASSSMDF  360
AAAMNFMPGS PSSLMSPSTF TPPMSPSAPN GISHSSLAWP HPDVPSLRLP GSNLQSSRLR  420
SSLNARDLAA EEFEMLQDYD LQQQQQLLNE FSCLSMNPNS LNRSNRSKTL NPSNLDDLFS  480
AESSSPRYND QGLGSCVYSP THKSAVFNQF QQQQGMFSPI NTNFSPKGVV EHPLMSGRMS  540
PRSVEPISPL SARASMLAQR EQQLHQFRSL SSRDLGTNLG AIVGSPVHSW SRWGSSNGKP  600
DWGTNTEELG KLRRSSSFEL GNNGEEPDLS WVQSLVKESP TELKEKAAGT TSSTVDSSYM  660
NEQTEVVDMA ERF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672777.10.0PREDICTED: zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A0K9QCP20.0A0A0K9QCP2_SPIOL; Uncharacterized protein
STRINGXP_010672777.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]