PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_062800_sfct.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 245aa    MW: 27931.6 Da    PI: 6.1598
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_062800_sfct.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.31.8e-1580132155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         ++ +hn+ Er RR++iN+ ++ Lr llP      + kKls  +++  + eYI +Lq
  Bv3_062800_sfct.t1  80 KKLNHNASERDRRKKINDMYSSLRALLPAtH---QRKKLSIPATVGWVLEYIPQLQ 132
                         6789*************************66...9999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.16479131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-1280132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-1380145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-1580146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.87E-1380135No hitNo description
SMARTSM003531.0E-1185137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MLASMSPLCP TLGWEYPIEL GTNQAFDNFD LDSMFLANFS SPQAQDNHRD NQELNDDVKQ  60
SDSPQGTSST DHYDNPILAK KLNHNASERD RRKKINDMYS SLRALLPATH QRKKLSIPAT  120
VGWVLEYIPQ LQKEVDDLNH KKEHILSTIS VQDGNPMEFI QEKKPRRSTI KKTTSSCTIS  180
ANRLGDKEMV IQISAFERIS ISEVLLVLEK NGYVVIDVSC FQSFGGTTFY NIHLWVSIIF  240
IFDYI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673161.11e-175PREDICTED: transcription factor bHLH101-like
STRINGXP_010673161.11e-174(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-40bHLH family protein