PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_063120_phgd.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 262aa    MW: 29546.9 Da    PI: 5.4375
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_063120_phgd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.7e-1370117254
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r  h+e+E+rRR+riNs +++Lr++lP        K +Ka+ L k+v+ + +L
  Bv3_063120_phgd.t1  70 RIHHKEAEKRRRERINSHLDRLRSILPCT-----SKTDKATLLSKVVQRVLEL 117
                         889*************************7.....699******9999877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.26968117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-1469131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-1170120No hitNo description
PfamPF000102.3E-1070117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-1370126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-1074123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2603.8E-6175227No hitNo description
CDDcd048731.55E-7175227No hitNo description
SuperFamilySSF550213.81E-6175249No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MQQFSDDFPA TTSSEMEIYR YLAGGGEVND VVNWPAKFNN KYSSSGSCSA SFYPGFMNET  60
AEAKALAASR IHHKEAEKRR RERINSHLDR LRSILPCTSK TDKATLLSKV VQRVLELKRQ  120
TSEIHELDNM MIPSENDEFA VYIHNNNSNE CDNNEDGDHI NVDSYNDNKL ILKASLCCED  180
RPDLFADLNG VLSSLNMKTL RAEMSSLGGR IQSVFVVSAD NDTQSDECAV FLRDALKGIV  240
QRSGSEERLK RRRRVFDATT DC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249254KRRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673045.10.0PREDICTED: transcription factor bHLH106
SwissprotO806742e-51BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A0K9R2V21e-142A0A0K9R2V2_SPIOL; Uncharacterized protein
STRINGXP_010673045.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.19e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]