PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_063380_rotz.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family G2-like
Protein Properties Length: 339aa    MW: 35078.6 Da    PI: 6.7647
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_063380_rotz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.52e-30120173155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Bv3_063380_rotz.t1 120 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 173
                         59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.059117176IPR017930Myb domain
SuperFamilySSF466893.49E-20117177IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-30119178IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-24121173IPR006447Myb domain, plants
PfamPF002491.4E-7123172IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MREEESNWFS KWEDELPSPD ELISLSQSLI TPDLASAFDI QSPSSNGNSN TPISILSPPQ  60
LLSHYHQSSS APQPPPPHPN SSEFDSSSAE LGCGGGGGGG GGGATSGGGG ADEPARTLKR  120
PRLVWTPQLH KRFVDAVAHL GIKNAVPKTI MQLMSVDGLT RENVASHLQK YRLYLKRMQG  180
LNNGGGGGGG SSGGGGVSGS GGDSATDHLF ASSPVPAHFL HQGGGGPGSG GGGGSGGRGN  240
SEHFMPYVPV TALNHHQMAA VAGHQQIQAQ FQHHRQMAHF GSAQGGAQFD HPFLSRQAQL  300
GPTRNGMMQS NSGFVEDVES ATANNGGRKV LTLFPIGDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-33120176157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673075.10.0PREDICTED: transcription factor PCL1
SwissprotO222106e-59MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A0K9QBX61e-155A0A0K9QBX6_SPIOL; Uncharacterized protein
STRINGXP_010673075.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.11e-73G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]