PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv3_063640_gaoz.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

C2H2

Protein Properties

Length: 323aa MW: 35834.4 Da PI: 8.5741

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv3_063640_gaoz.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0011	115	135	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cg+ Fs+ L H++ H Bv3_063640_gaoz.t1 115 CKFCGQQFSSTQALGGHQNAH 135 ******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.5E-5	110	141	No hit	No description
PROSITE profile	PS50157	11.302	113	140	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	115	135	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MRAPGCEASF QTKQIVSAIP AELPPKKRGL EREEEILDEP PERNNLRPEF NSSEIQITPQ 60 NVPQGKALSD QVPPEKHQSD PSFGLFLHLN EGENGEPSEQ PPRSPPPMSR HPIACKFCGQ 120 QFSSTQALGG HQNAHKQERE MQKAMKAANE YGTTPIIYNL PGTKPPLLHG SYYGHQFQYP 180 PYHGYAYRGW QPRPIYSTPR MGLLRSPPGF ARTLSGFIGP SSIKPLNPAY HPAYALGPIR 240 RPLLGSTNFD PSFASNLTNF LQVNENEGGP TKKQCVESTG LNLSLRRDES VQVDLQPKQQ 300 KSSAVPSPMD PNEPTKLDLT LKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010673098.1	0.0	PREDICTED: uncharacterized protein LOC104889553
STRING	XP_010673098.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	9e-10	C2H2 family protein