PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_064050_dwac.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 373aa    MW: 43573.4 Da    PI: 8.1856
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_064050_dwac.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000342143123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y C+ Cg + s ks+L++Hi +H
  Bv3_064050_dwac.t1 21 YYCEFCGICRSKKSLLTSHILSH 43
                        89*******************96 PP
2zf-C2H221.56.1e-076990223
                        EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                        +C+ Cg +F+ + +Lk+H+ +H
  Bv3_064050_dwac.t1 69 TCEECGATFKKPAHLKQHMLSH 90
                        6*******************99 PP
3zf-C2H221.65.7e-0796120123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         ++Cp  dC++s++rk++L+rH+  H
  Bv3_064050_dwac.t1  96 FTCPvdDCNTSYRRKDHLNRHLLQH 120
                         89*******************9887 PP
4zf-C2H215.16.5e-05125150123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                         +kCp  +C+k F+ + n  rH++  H
  Bv3_064050_dwac.t1 125 FKCPveNCTKEFTVHGNISRHMKEfH 150
                         89*********************988 PP
5zf-C2H218.46e-06166190123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         ++C+   Cgk F+  s+L++H  +H
  Bv3_064050_dwac.t1 166 HVCQeeGCGKEFKYASQLRKHAESH 190
                         789999***************9988 PP
6zf-C2H215.45.3e-05255279223
                         EET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                         kC+   C+ sF++ksn+++H +  H
  Bv3_064050_dwac.t1 255 KCSfeGCNHSFTTKSNMQQHVKAvH 279
                         79999***************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.8712149IPR007087Zinc finger, C2H2
SMARTSM00355132143IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.8016895IPR007087Zinc finger, C2H2
SMARTSM003550.00416890IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.6E-56986IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SuperFamilySSF576671.89E-1076128No hitNo description
Gene3DG3DSA:3.30.160.602.8E-1287122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.9196125IPR007087Zinc finger, C2H2
SMARTSM003556.1E-496120IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098120IPR007087Zinc finger, C2H2
SuperFamilySSF576679.56E-6123152No hitNo description
Gene3DG3DSA:3.30.160.602.1E-5123147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.325125155IPR007087Zinc finger, C2H2
SMARTSM003550.019125150IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280127150IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.9E-7161190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.658166195IPR007087Zinc finger, C2H2
SMARTSM003550.004166190IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280168190IPR007087Zinc finger, C2H2
SMARTSM003552.6197222IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280199222IPR007087Zinc finger, C2H2
SMARTSM0035527225246IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.01E-8237292No hitNo description
PROSITE profilePS5015711.697254284IPR007087Zinc finger, C2H2
SMARTSM003552.0E-4254279IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-7255279IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280256279IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-4280308IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.2285311IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280287311IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MGEEHEESSK IGPIFRDIRR YYCEFCGICR SKKSLLTSHI LSHHQNEMEK RREIEEEEEE  60
GEEKKCNNTC EECGATFKKP AHLKQHMLSH SVERLFTCPV DDCNTSYRRK DHLNRHLLQH  120
QGKLFKCPVE NCTKEFTVHG NISRHMKEFH EHKPAVPDNG KEQSKHVCQE EGCGKEFKYA  180
SQLRKHAESH VLQSSETFCG DPGCMKPFAS VECLRAHMRS CHQYVNCEVC GSKHLRKNYK  240
RHLQTHDEHL PTTLKCSFEG CNHSFTTKSN MQQHVKAVHL KLKPFICSIP GCGMRFAFKH  300
VRDNHEKTSR HVYVHGDLEE FDEQFRSRPR GGQKRKLPDI EMLMRKRISA PNHSDSAQNR  360
SSEFLMWLLS DDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A9e-157221719155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D9e-157221719155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673198.10.0PREDICTED: transcription factor IIIA
SwissprotQ84MZ41e-138TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0K9R4E80.0A0A0K9R4E8_SPIOL; Uncharacterized protein
STRINGXP_010673198.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-129transcription factor IIIA