PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_064050_dwac.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 101aa    MW: 11853.4 Da    PI: 5.8688
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_064050_dwac.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-052143123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y C+ Cg + s ks+L++Hi +H
  Bv3_064050_dwac.t2 21 YYCEFCGICRSKKSLLTSHILSH 43
                        89*******************96 PP
2zf-C2H224.28.4e-086990223
                        EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                        +C+ Cg +F+ + +Lk+H+ +H
  Bv3_064050_dwac.t2 69 TCEECGATFKKPAHLKQHMLSH 90
                        7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355132143IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.8712149IPR007087Zinc finger, C2H2
SMARTSM003550.00416890IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7626895IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-66993IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF000961.5E-56990IPR007087Zinc finger, C2H2
SuperFamilySSF576678.86E-66999No hitNo description
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MGEEHEESSK IGPIFRDIRR YYCEFCGICR SKKSLLTSHI LSHHQNEMEK RREIEEEEEE  60
GEEKKCNNTC EECGATFKKP AHLKQHMLSH SVEIISLCQD V
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673198.12e-44PREDICTED: transcription factor IIIA
SwissprotQ84MZ45e-23TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0K9R4E82e-34A0A0K9R4E8_SPIOL; Uncharacterized protein
STRINGXP_010673198.19e-44(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.25e-15transcription factor IIIA