PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_064050_dwac.t3
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 228aa    MW: 26434 Da    PI: 8.6856
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_064050_dwac.t3genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.33.1e-062145123
                        EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                        ++C+   Cgk F+  s+L++H  +H
  Bv3_064050_dwac.t3 21 HVCQeeGCGKEFKYASQLRKHAESH 45
                        789999***************9988 PP
2zf-C2H216.32.8e-05110134223
                         EET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                         kC+   C+ sF++ksn+++H +  H
  Bv3_064050_dwac.t3 110 KCSfeGCNHSFTTKSNMQQHVKAvH 134
                         79999***************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.5E-71645IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0042145IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6582150IPR007087Zinc finger, C2H2
PROSITE patternPS0002802345IPR007087Zinc finger, C2H2
SMARTSM003552.65277IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805477IPR007087Zinc finger, C2H2
SMARTSM003552780101IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.59E-892147No hitNo description
SMARTSM003552.0E-4109134IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.697109139IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.2E-8110134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280111134IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.3E-5135163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.2140166IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280142166IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MKEFHEHKPA VPDNGKEQSK HVCQEEGCGK EFKYASQLRK HAESHVLQSS ETFCGDPGCM  60
KPFASVECLR AHMRSCHQYV NCEVCGSKHL RKNYKRHLQT HDEHLPTTLK CSFEGCNHSF  120
TTKSNMQQHV KAVHLKLKPF ICSIPGCGMR FAFKHVRDNH EKTSRHVYVH GDLEEFDEQF  180
RSRPRGGQKR KLPDIEMLMR KRISAPNHSD SAQNRSSEFL MWLLSDDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gli_A4e-11231714155PROTEIN (FIVE-FINGER GLI)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673198.11e-169PREDICTED: transcription factor IIIA
SwissprotQ84MZ43e-79TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0K9R4E81e-134A0A0K9R4E8_SPIOL; Uncharacterized protein
STRINGXP_010673198.11e-169(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.13e-82transcription factor IIIA