PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_065890_nand.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 425aa    MW: 47183.7 Da    PI: 8.6951
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_065890_nand.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.4e-19239289256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+ge
  Bv3_065890_nand.t1 239 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAFAYDTAAYMLRGE 289
                         59******9.**********955...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.49E-32238298No hitNo description
SuperFamilySSF541714.71E-23239297IPR016177DNA-binding domain
SMARTSM003801.2E-34239302IPR001471AP2/ERF domain
PROSITE profilePS5103222.932239296IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-32239298IPR001471AP2/ERF domain
PRINTSPR003674.6E-11240251IPR001471AP2/ERF domain
PfamPF008474.8E-13240289IPR001471AP2/ERF domain
PRINTSPR003674.6E-11262278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MEDQSLELES FMHRNINMPP PFPKQDPNNE SSDERRIEFR SLPFFSDDRG LCSSSTSEFM  60
SKQFMIPEHN TNTTATTQLG STTSALDFTF SRASSFVNFF KSSALVADHS RLPPTSSNSA  120
ASFHTNMSDL TFFSKESKLI NSSHSNNKVG RSFQDLAPLS ADPLLQCGQT SQHVSTGHDQ  180
WLRMSAADFS SKVVTTDIRL SPTKTQPMKK STAAGKRLQT LLHPHKAGSS TSTSTLGKLY  240
RGVRQRHWGK WVAEIRLPRN RTRVWLGTFD TAEEAAFAYD TAAYMLRGEY AHLNFPDQKH  300
LLKLNSLNGA TAALLEAKLQ AISQQAGLKK SGDHDLLPAS SLLINHLPDS TNNPTRSKSS  360
GQVSVRKEWQ FDLDGRVIGT SQIIETNKRS HEASSDHTLD AVQLSRMPSL DMDSIWDALL  420
LSDTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20237306368ATERF1
3gcc_A2e-20237306368ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673427.10.0PREDICTED: ethylene-responsive transcription factor ERF062
TrEMBLA0A0J8CM810.0A0A0J8CM81_BETVU; Uncharacterized protein
STRINGXP_010673427.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.13e-41ERF family protein