PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_065930_qfap.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 560aa    MW: 60935.2 Da    PI: 5.391
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_065930_qfap.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.59.8e-13325376155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ +  Lr+l+P++   + ++ + a+i   A+e++++L+
  Bv3_065930_qfap.t1 325 QRMTHIAVERNRRKQMNEHLRVLRSLMPSS---YVQRGDQASIIGGAIEFVRELE 376
                         79****************************...9*****************9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.08E-14323380No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13323379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.288324375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-16324389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-10325376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-9330381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MQKEENYTGA SEYEAGGRFG IANDVDNSSV APDPTYHHHH QGGPGPLLSY HQPEAEAEVQ  60
GQGHNQIIHG SGSGSVMVDY MLNDPINNAI PSRTAYHHHH HHHEQPINCV SGRGYADRTG  120
LSFADVMQFA DFGPKLGLNR FQQHQQDDES TKTNTMIPGN GIDPVYFLKF PVLSNSGNTS  180
TIHDDRNHSI TDREGGFGDP LEELKEYSYD HQQEDASAAA AAAAAAAAAA AVLLTAGTSN  240
NSLSNYANPV QLEFLGNTHD ENDLMDLSTG EKSGANVELE GMEAGGEGAA AAGAAAAMGN  300
NKSSSSSSKR KRPRTIKTNE EVESQRMTHI AVERNRRKQM NEHLRVLRSL MPSSYVQRGD  360
QASIIGGAIE FVRELEQLLQ CLESQKRRRL YGDQGRPIAM GDSNSNSSSS TTVLGVGLVQ  420
QMPQVQAPLA LAFTPPNHQA QDDDQLRLLV DHQLDPDSSL LPEETAESKS CIADVEVKVL  480
GFDALIKILS RRRPGQLIKA IAALEDLHFT ILHTNITTIE QTVLYSFNVK VANEARFTAD  540
DIASSVQQIF TFIHSNTNIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325336RMTHIAVERNRR
2385389KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673433.10.0PREDICTED: transcription factor FAMA isoform X2
TrEMBLA0A0J8CS430.0A0A0J8CS43_BETVU; Uncharacterized protein
STRINGXP_010673433.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.11e-92bHLH family protein