PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_066240_pcmh.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 446aa    MW: 48744 Da    PI: 7.7001
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_066240_pcmh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.62.4e-09124145426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         + C+++ + G C+yGd+CkF H+
  Bv3_066240_pcmh.t1 124 RVCNYWVQ-GNCSYGDNCKFLHS 145
                         78******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0263156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.0523157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699120147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-8120145IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6122146IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-7124145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-7124143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.108.3E-45144437IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509782.01E-47151439IPR017986WD40-repeat-containing domain
SMARTSM003201.8E-5151189IPR001680WD40 repeat
PfamPF004001.8E-5153189IPR001680WD40 repeat
PROSITE profilePS5008211.544158198IPR001680WD40 repeat
PROSITE profilePS5029410.97158198IPR017986WD40-repeat-containing domain
PRINTSPR003201.5E-6176190IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780176190IPR019775WD40 repeat, conserved site
SMARTSM003205.6229266IPR001680WD40 repeat
PROSITE profilePS5029420.224236359IPR017986WD40-repeat-containing domain
SMARTSM003200.017273310IPR001680WD40 repeat
PfamPF004000.027278310IPR001680WD40 repeat
PROSITE profilePS5008211.712280319IPR001680WD40 repeat
PRINTSPR003201.5E-6297311IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780297311IPR019775WD40 repeat, conserved site
SMARTSM003209.1E-4313350IPR001680WD40 repeat
PfamPF004000.026315349IPR001680WD40 repeat
PROSITE profilePS500828.871320359IPR001680WD40 repeat
PRINTSPR003201.5E-6337351IPR020472G-protein beta WD-40 repeat
SMARTSM0032019354397IPR001680WD40 repeat
SMARTSM003200.62400437IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDIESNGSNK RVFHRLGNKP HQNHNQNQSQ NQIQKVCYHW QAGRCNRNPC AFLHRELPPP  60
PLPSHSSSSA STSFNGGSSK RAHGLGGVGP RNDGFSSRKN PNFNNTWGRV SGGAGAGPPK  120
KMERVCNYWV QGNCSYGDNC KFLHSWSIGH SFSLLTTLEG HQKVVTGITL PSGDKLYTGS  180
KDEHVRIWDC ASGQCVSAIH LGGEIGCMIS EGPWVFIGLP NMVKAWNIET VTDMSLSGPA  240
GQVYSLVVGN DMLFAGTQDG SILAWKFNPA TNCFEPAASL VGHTHAVVTM FVGANRLYSG  300
SMDNSIRVWN LETLQCIQIL TEHTSVVMSV LCWEQFLLSA SLDNTIKVWA ATQSGNLETT  360
YTHTEEHGIL TLCGMFDSEA KPVLLCSTND NFVHVYDLPS FTERGKIISK QEIRAVQAGP  420
SGLFFTGDGN GQVRVWNWLK EPKAAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A4e-211554378323Tako8
6g6n_A4e-211554378323Tako8
6g6n_B4e-211554378323Tako8
6g6n_C4e-211554378323Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693461.10.0PREDICTED: zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A0K9QWH90.0A0A0K9QWH9_SPIOL; Uncharacterized protein
STRINGXP_010693461.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein