PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_067340_aggh.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 257aa    MW: 29045.2 Da    PI: 5.6867
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_067340_aggh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.74.9e-1488140155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         r++ h+e+Er+RR ++ + ++ Lr+ lP      +++K s ++ L +Av+YIk+L+
  Bv3_067340_aggh.t1  88 RKTIHKEVERQRRLEMSNLYSSLRSTLPAeY---TKGKRSTSDHLAEAVNYIKDLE 140
                         6889*************************77...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.34E-1285144No hitNo description
SuperFamilySSF474596.67E-1585160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.71387139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-1188140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-1488158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-593145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MFPFQQSGEL SFQTTDFVGE EEQFNVENQI YWTDVASAEV GNMNTNVGLG QDNRERVRGR  60
GRGRGRKSTF SPNNVISNCN DNSDEQKRKT IHKEVERQRR LEMSNLYSSL RSTLPAEYTK  120
GKRSTSDHLA EAVNYIKDLE NNVKGLADKR DRLKSESEWT APTYHVGGSS NPRQCRGSVE  180
IHPCVGGLDI DINVNYDDDS FCLSSALQVV YEEGLSVSSC TSTKVNEKIM HKIICEVTDI  240
SCIDFSRFHQ RLIDLVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15565RVRGRGRGRGR
28699KRKTIHKEVERQRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693676.11e-174PREDICTED: uncharacterized protein LOC104906600
TrEMBLA0A0J8BG100.0A0A0J8BG10_BETVU; Uncharacterized protein
STRINGXP_010693676.11e-174(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.12e-36bHLH family protein