PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_067720_fihx.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 247aa    MW: 27624.7 Da    PI: 9.4692
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_067720_fihx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000746183123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C+  Fs++  L  H++ H
  Bv3_067720_fihx.t1 61 FTCNYCKGEFSTSQALGGHQNAH 83
                        89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.05E-55888No hitNo description
PfamPF139122.2E-56085IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.7626188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MESPSSSKNP INNKRDDHNN VKKMKGAMVS SNSANNTTLD LKLSSFSQEI RPIESNSTRV  60
FTCNYCKGEF STSQALGGHQ NAHKQERARD KMRQATKFPP YNANNNLYYP YNFGTYSNIA  120
SYGGYCKRSP LGVIKTNSMI QKPAYRWPIM NNHGYRYGYG AINQAKPSFI VNSQSSNDDI  180
VNYSSINNLN NLSKSLPTLG EGDFKGNYRI VESGTGNIEK EDDDHISGGK LDQMKPENSC  240
LDLSLRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693745.10.0PREDICTED: zinc finger protein 3
TrEMBLA0A0J8BFU40.0A0A0J8BFU4_BETVU; Uncharacterized protein
STRINGXP_010693745.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-13zinc-finger protein 1