PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_068030_qjki.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NF-X1
Protein Properties Length: 1106aa    MW: 119120 Da    PI: 8.2502
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_068030_qjki.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X1193e-06303321119
            zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                         CG+H+C ++CH+GpC +C+
  Bv3_068030_qjki.t1 303 CGRHQCDQICHTGPCESCQ 321
                         ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500168.707133194IPR019787Zinc finger, PHD-finger
SuperFamilySSF578503.39E-7135195No hitNo description
PROSITE patternPS013590136191IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.465136192IPR001841Zinc finger, RING-type
CDDcd060088.16E-6225286No hitNo description
SMARTSM004380.12248266IPR000967Zinc finger, NF-X1-type
PfamPF0142212250265IPR000967Zinc finger, NF-X1-type
CDDcd060081.11E-10293341No hitNo description
PfamPF014229.0E-5303320IPR000967Zinc finger, NF-X1-type
SMARTSM004380.004303322IPR000967Zinc finger, NF-X1-type
CDDcd060082.62E-7357399No hitNo description
PfamPF014220.048361384IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0061367386IPR000967Zinc finger, NF-X1-type
CDDcd060082.14E-13415461No hitNo description
PfamPF014229.2E-4425443IPR000967Zinc finger, NF-X1-type
SMARTSM004380.012425444IPR000967Zinc finger, NF-X1-type
PfamPF0142218483494IPR000967Zinc finger, NF-X1-type
SMARTSM0043875483513IPR000967Zinc finger, NF-X1-type
CDDcd060081.83E-6511554No hitNo description
PfamPF014220.16521538IPR000967Zinc finger, NF-X1-type
SMARTSM004380.91521540IPR000967Zinc finger, NF-X1-type
CDDcd060086.02E-5568616No hitNo description
PfamPF0142233578595IPR000967Zinc finger, NF-X1-type
SMARTSM004380.074578596IPR000967Zinc finger, NF-X1-type
PfamPF014220.98631649IPR000967Zinc finger, NF-X1-type
SMARTSM004380.63631651IPR000967Zinc finger, NF-X1-type
CDDcd060081.05E-4660709No hitNo description
PfamPF0142218664690IPR000967Zinc finger, NF-X1-type
SMARTSM004380.032671692IPR000967Zinc finger, NF-X1-type
PfamPF014241.5E-4799866IPR001374R3H domain
Gene3DG3DSA:3.30.70.3302.4E-4915959IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1106 aa     Download sequence    Send to blast
MSSLPQNERR HRSRISGQNA RQQWVPRGPG ILSSPPSNLN VYAGENAGDS NVGAGQMDSR  60
GDQGFRGGGG GQGGGRSYMG RPQHLRSERN DTREGVGERG NLNKGRSNPR RNVRDSDLPQ  120
LVQEIQGKLS KGTVECMICY DMVRRTAPVW SCSSCYSIFH LNCIKKWARA PTSVDMIAEK  180
SQGFNWRCPG CQAVQLTASK DVRYICFCGK RHDPPSDLYL TPHSCGEPCG KPLEKEVLRP  240
GLSKEDMCPH VCVMQCHPGP CPPCKAFAPP RHCPCGKKVI TTRCSERKSV QTCGQVCEKI  300
LECGRHQCDQ ICHTGPCESC QVPMDASCFC KKKSEVVVCG DMSLKGHIKL DHGLFSCNST  360
CGKKLRCENH NCADICHPGA CGECDFLPSK IKTCYCGKTN LQDQRKSCLD PVPTCSGTCG  420
KRLPCGKHYC KGKCHSGSCP PCSELVTQKC RCGSTSRTVQ CFKTTLVNEN FVCDRTCGRK  480
KNCGRHRCSE RCCPLSSSSN TASGDWNPHF CSILCGKKLK CGQHACEAYC HCGHCPPCLE  540
TIFTDLTCAC GRTSIPPPLP CGTPPPSCQY PCLVPQPCGH QSTHSCHFGD CPPCSVPIAK  600
ECIGGHVVLR NIPCGSKDIT CNTLCGKARR CGLHACARSC HPPPCDPSCG LPDPAIKASC  660
GQVCGAPRRD CRHTCNALCH PSASCPDSRC EFPVTISCSC GRITATVPCD AGGSSAANVL  720
EAFILQKLPA PLQPVQANEK RVPLGQRKLT CDDECAKLEK KRVLADAFDI SQISLDALHF  780
GENPSASQLI SELLRRDPKW VLAVEERCKQ LVLGKGRGSC SSGNVKVHVF CPMLKEKRDA  840
VRLIAERWKL SISAAGWEPK RFIVVHATLK SKAPPRILGP KGSTAVNAHH PPIFDPLVDM  900
DPRLVVALLD LPSDADISTL VLRFGGECEL VWLNDKNALA VFSDPARAAT AMRRLDNGSV  960
YQGAAVVQHS DAGSAAVSPW GGAAASSAVK GNPWKKAAVK NGNIWVEDSW GEEESSSGSG  1020
PADVGSSSWK GREIPVTATT NRWTLLNSDS SSSSAASSAK VVDYAKRTAA SGRESKSAPL  1080
GSASVELMST PDDNAEVVDD WEKAYE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16575RGGGGGQGGGR
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693736.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A0J8E6T70.0A0A0J8E6T7_BETVU; Uncharacterized protein
STRINGXP_010693736.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1