PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_068100_ykce.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 281aa    MW: 32170.1 Da    PI: 8.309
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_068100_ykce.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.4e-06951091226
                         TS--TTTTT-SS-SS CS
             zf-CCCH  12 tGtCkyGdrCkFaHg 26 
                         +G C++G+ C F+Hg
  Bv3_068100_ykce.t1  95 SGKCPRGELCEFSHG 109
                         36************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0381110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.72381111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-487112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-4116146IPR000571Zinc finger, CCCH-type
SMARTSM0035610119142IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MFRVDMENIL RQYTNAYHER IRYPNPFNDA DFETDDFESN EFRMYSFKIK KCPLNRAHDW  60
TICPYAHQGE RARRRDPRKV LYAAVSCPDY KASSSGKCPR GELCEFSHGV FEYWLHPTKY  120
RTRVCNAGDC CTRSVCFFAH SPQELRVEPM AYIPNWFRLA LRAKTEAETS NTLSSTSSSA  180
TRTSIIASSS TNRGRELGVI GRPKTSNTPT SALWELGSSS TTSSVVEMVR PTQELKLDFL  240
ESLRMMRISD YYNNQSNNVN NATNVKSDVP NLDWVTDLLA G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693753.10.0PREDICTED: zinc finger CCCH domain-containing protein 20
TrEMBLA0A0J8BFX80.0A0A0J8BFX8_BETVU; Uncharacterized protein
STRINGXP_010693753.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.13e-51C3H family protein