PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_068470_jamk.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 307aa    MW: 34155.2 Da    PI: 7.6614
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_068470_jamk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-173382255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ GVr+++ +grWvAeI+d +   ++ r +lg+f tae Aa+a+++a+  l+g
  Bv3_068470_jamk.t1 33 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEAAARAYDEAACLLRG 82
                        799******.7*********32...35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-123382IPR001471AP2/ERF domain
SMARTSM003802.1E-353396IPR001471AP2/ERF domain
CDDcd000181.28E-173389No hitNo description
Gene3DG3DSA:3.30.730.101.8E-273390IPR001471AP2/ERF domain
PROSITE profilePS5103219.5853390IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-183391IPR016177DNA-binding domain
PRINTSPR003673.5E-73445IPR001471AP2/ERF domain
PRINTSPR003673.5E-75672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSTKNVKSIP INNTTKLKGR SKRSSSNGHK NNKFVGVRQR PSGRWVAEIK DTTQKIRMWL  60
GTFETAEAAA RAYDEAACLL RGSNTRTNFV VTHVSPNSPL ASRIKNLLKN KKLESQISND  120
EHDHDHVIPN NPLVIPSTTN TTAVPPNTST TLSSQNFNLA SIIHHNGNFR YKNLDNFCSQ  180
TQSLQENRVY GDVYRPQFSG FVGSYELGDY SSMSSQCGMP EGYGHFNPSL PLSLSHEEFP  240
ENNVVAPPAM GGELIFSEAA KMQMEKEIST SMYAASSHGM HEYIDFLHDP VDAFWDLPPL  300
CSSFCSM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693871.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A0K9QV324e-80A0A0K9QV32_SPIOL; Uncharacterized protein
STRINGXP_010693871.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-27related to AP2 11