PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_069570_cwtt.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 236aa    MW: 27799.4 Da    PI: 9.8675
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_069570_cwtt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.7e-181360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd+ll+++v++ G g+W+++ar  g++R +k+c++rw +yl
  Bv3_069570_cwtt.t1 13 KGPWTAEEDKLLIEYVNLQGEGRWNSVARLTGLRRNGKSCRLRWVNYL 60
                        79********************************************97 PP
2Myb_DNA-binding52.98.4e-1766110147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Bv3_069570_cwtt.t1  66 RGQITPHEESIILELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 110
                         7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.649860IPR017930Myb domain
SuperFamilySSF466894.4E-3011107IPR009057Homeodomain-like
SMARTSM007173.5E-151262IPR001005SANT/Myb domain
PfamPF002491.8E-161360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-231467IPR009057Homeodomain-like
CDDcd001671.87E-101560No hitNo description
PROSITE profilePS5129424.65561115IPR017930Myb domain
SMARTSM007173.9E-1565113IPR001005SANT/Myb domain
PfamPF002494.9E-1466110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2468114IPR009057Homeodomain-like
CDDcd001672.21E-1070111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSWGMMGDDG WRKGPWTAEE DKLLIEYVNL QGEGRWNSVA RLTGLRRNGK SCRLRWVNYL  60
RPDLKRGQIT PHEESIILEL HAKWGNRWST IARSLPGRTD NEIKNYWRTH FKKKEKTPSN  120
NVEKSKTRLL RKQQFQQQYK NQQQHQQQVQ QQQHFTSMDM KKIMSLLVDE NETKVPTTSL  180
PLPRQSEMAT NMYYPTNNTT EEQEILSFML SSNVSTEDHL CLGALWNIDD NFQGAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261311427127MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693964.11e-178PREDICTED: transcription factor MYB48-like
TrEMBLA0A2P6QRR51e-92A0A2P6QRR5_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_010693964.11e-177(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.11e-83myb domain protein 305