PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_069930_zsar.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NF-YC
Protein Properties Length: 238aa    MW: 26427.7 Da    PI: 6.2215
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_069930_zsar.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC138.12.4e-4343143299
               NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 
                         l+sf e +      + df+nh+lPlarik+i+k+d++v+misa+aPvll++ace+fi +l+lrsw+ +ee+kr+tl+k+di+aa++ td f
  Bv3_069930_zsar.t1  43 LRSFSEIKhqeSAYTDDFRNHSLPLARIKRIMKSDDNVRMISADAPVLLARACEMFIQDLSLRSWNCTEESKRKTLQKADISAALSTTDLF 133
                         55665433212455789************************************************************************** PP

               NF-YC  90 dflvdivprd 99 
                         dflvd vpr+
  Bv3_069930_zsar.t1 134 DFLVDLVPRE 143
                         ********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.18E-3213136IPR009072Histone-fold
PfamPF008081.4E-2264127IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.8E-3365142IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MEPHWSFYYS DHQHQHLLVN NTPHSNQQQP SASGGSNLLQ QQLRSFSEIK HQESAYTDDF  60
RNHSLPLARI KRIMKSDDNV RMISADAPVL LARACEMFIQ DLSLRSWNCT EESKRKTLQK  120
ADISAALSTT DLFDFLVDLV PREKPLSSAM PPVNLPIISS MGNANSSLGA IHNPQHLQQP  180
EGCCLGEYQA AAGLTMGVQM QLVQNDQVDG GGYSSTKNIQ GGWPNCLAYQ PAWPPPDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-4352142595NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694015.11e-179PREDICTED: nuclear transcription factor Y subunit C-2
TrEMBLA0A0K9RLI33e-78A0A0K9RLI3_SPIOL; Uncharacterized protein
STRINGXP_010694015.11e-179(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.33e-47nuclear factor Y, subunit C3