PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_069990_sghj.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family CPP
Protein Properties Length: 761aa    MW: 83178 Da    PI: 7.0937
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_069990_sghj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.12.7e-16466504240
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         ++k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk 
  Bv3_069990_sghj.t1 466 SCKRCNCKKSKCLKLYCECFAAGVYCVEPCSCQDCFNKP 504
                         689**********************************96 PP
2TCR50.93.1e-16551589139
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                         ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Bv3_069990_sghj.t1 551 RHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNA 589
                         589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.0E-17465506IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.785466591IPR005172CRC domain
PfamPF036388.7E-12468503IPR005172CRC domain
SMARTSM011143.7E-17551592IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-11553589IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MDTPERNQIG TPISKMEESP FSSFINNLSP INPTKATHVS QTFSSLSFTS PPSVFTSPHV  60
SLQKDYKFLR RHQVSDLAKS PFALEAGNKD SVAKEVVSSG HLSDSLEIVQ VRGETASGSE  120
DSAKPLEENT DCAKELPRVL KYDIGSPRCK TAVTSSGNET NCEPDASAAL VQYVQEPSVR  180
GSFGTELNSQ VMNHDNEETC DWQSLISGSS DLFIFDSPNI ATSKESVQKS EEKETNVFTS  240
LLSRFPHDEA FSMQTTLHDG SSNCNEAYES IENSTQPTEA PELKQMEQPP ETLEISSVNE  300
LLCGDSVGKK GKQPFSNLHR GLRRRCLTFE IPRTKKSIDS ALFSSSLSSL QSEEKPLSCI  360
RQPITPGNDS SRRILPGIGL HLNALAAASK DCSNPNQEII SPTAQDPFMK SLDSSSLRKD  420
EGPAENVAEI AENSSQASVY AAIEELNPNS PKKKRRKFET IGEGESCKRC NCKKSKCLKL  480
YCECFAAGVY CVEPCSCQDC FNKPIHEETV LATRKQIESR NPLAFAPKVI RTTDSVQELG  540
EDTTRTPASA RHKRGCNCKK SNCLKKYCEC YQGGVGCSIN CRCEGCKNAF GRKDGSTMIA  600
TEAEIEKLQA SEKSIMDKSS DIHRSHDEDD QHSEFSIPQT PSRLYRPLVP LATSSKGKPP  660
RSSLAMSGLS SSLHPVDGPG RSTFLRSQSC AEKHHHSVSV DEIPAVLQNT SPPSSGLKTL  720
SPNSKRVLSP HNANGQSHGL RSSRKLILQS IPAFPSLSPR R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1647058814120Protein lin-54 homolog
5fd3_B1e-1647058814120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1451455KKKRR
2451456KKKRRK
3452456KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694035.10.0PREDICTED: protein tesmin/TSO1-like CXC 2
TrEMBLA0A0K9R5V10.0A0A0K9R5V1_SPIOL; Uncharacterized protein
STRINGXP_010694035.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-117TESMIN/TSO1-like CXC 2