PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_071660_siif.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 299aa    MW: 31356.4 Da    PI: 9.7995
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_071660_siif.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.71.9e-08105130227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         kt++C+ f     Ck+Gd+C+FaHg+
  Bv4_071660_siif.t1 105 KTKICNKFNTPDGCKFGDKCHFAHGE 130
                         99**********************96 PP
2zf-CCCH344.9e-11266290126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt+lC +f + G C +GdrC+FaHg
  Bv4_071660_siif.t1 266 FKTKLCENFTK-GACTFGDRCHFAHG 290
                         69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.73764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0423765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-63863IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-73962IPR000571Zinc finger, CCCH-type
PfamPF146081.84562No hitNo description
PROSITE profilePS5010313.713103131IPR000571Zinc finger, CCCH-type
SMARTSM003560.0059103130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-8104133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-13104134IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-6105130IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.17E-14167246IPR004088K Homology domain, type 1
SMARTSM003222.3E-12173243IPR004087K Homology domain
PROSITE profilePS5008414.152174238IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.7E-16174246IPR004088K Homology domain, type 1
CDDcd001056.30E-14176239No hitNo description
PfamPF000137.6E-10176240IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.9E-15264296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.586265292IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-7265291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-8265295IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-9266290IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDFGGPRKRG RPEASVNGHG GFKKSRPESE SFTSGVGSKS KPCTKFFSTS GCPFGEGCHF  60
LHYVPGGLKA VSQMVNFGGA PVPPPVRNIA GPPSFPDGQA GQAGKTKICN KFNTPDGCKF  120
GDKCHFAHGE WELGRPSMPS HEDPRGMGHM GGRMGGRMEP PPPGLGGASN FGASATAKVS  180
IDAALAGAVI GKSGTNSKHI CRLTGVKLSI RDHETDSSKR NIELEGTFDQ IKQASSMVEE  240
LIRNVKAASG PPVKQATGHG GGANNFKTKL CENFTKGACT FGDRCHFAHG AEEMRKSAI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673537.10.0PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X1
SwissprotQ7F8R01e-111C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A0K9S1U11e-172A0A0K9S1U1_SPIOL; Uncharacterized protein
STRINGXP_010673537.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-50C3H family protein