PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_071820_sumy.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 294aa    MW: 32599.7 Da    PI: 5.5349
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_071820_sumy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-194493255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++g
  Bv4_071820_sumy.t1 44 RYLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMRG 93
                        588******.**********965...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.8E-3444108IPR001471AP2/ERF domain
PfamPF008472.8E-124493IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-2844102IPR001471AP2/ERF domain
CDDcd000181.31E-2944101No hitNo description
PROSITE profilePS5103221.06144102IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-1945102IPR016177DNA-binding domain
PRINTSPR003671.2E-84556IPR001471AP2/ERF domain
PRINTSPR003671.2E-86783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDYFGMSTNS NVAKTPSPRS KRKHQQQQQQ QQHKDESQSP PSVRYLGVRR RPWGRYAAEI  60
RDPTTKERHW LGTFDTAEEA ALAYDRAARS MRGPSRARTN FVYSDSPPGS SVTSILSPDD  120
QSHLNQIFFT NGPSSAQAQP NPNDQQFSPY WNINYPQPNT SNYQTTLDNN NIEPTKEVEL  180
PPLPPDITSS YNMGFGAGTG MDMGMNTDFS MGMNMGQWIG NDPDFFGLQA HIGSGGLDSI  240
VGINESSTSN GPGPNDNNHY HSIMQHSPIF SKMPVVSDPV FDGFDLGSSP AFFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-1945101359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673983.10.0PREDICTED: ethylene-responsive transcription factor LEP
SwissprotQ9FZ908e-43ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBLA0A0K9S1V41e-120A0A0K9S1V4_SPIOL; Uncharacterized protein
STRINGXP_010673983.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.12e-33ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]