PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_072220_zfoe.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 452aa    MW: 49336.2 Da    PI: 6.9275
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_072220_zfoe.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.3e-13391436655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L++l+P+     +k  + a++L +AveYIk+Lq
  Bv4_072220_zfoe.t1 391 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTADMLDLAVEYIKDLQ 436
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.173385435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-15388444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.42E-12389440No hitNo description
Gene3DG3DSA:4.10.280.101.8E-15390446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-13391441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9391436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MDSDFQQQQY PHHFHEFPRQ FHHQKQQTNN LTRFRSAPSS YFASFLDAAA DTVTTTGGAS  60
GGGGGGGVGV VGGGGGGGAE KREYTNARPL SPETESIFAN FMSSIGAENN SSSQKLCNIQ  120
ETSAVQPEYT VRVKEETDTQ HQQQLQQSNF NTQSQMLYHI PPKPPLSNQH TAAVSSAMQN  180
SFKAVAASSS GINSIPLMRT GGGVGINNNN VSLTRHSSSP AGFFANLNMD TGYGMIGGMG  240
NYGGGNGGNV QVNVSSGQAS TSDLINQNSD VAAKSLRMNS LDEKRFSHSS NNHNNDSNYG  300
FSMNSWDDSI LSENYSSLDG VEDEDIKIFP ELNTSENQSG EGKHRPPPLT HHLSLPKTLP  360
EMSNMEKFLQ YQDSVPLRIR AKRGCATHPR SIAERVRRTR ISERMRKLQD LVPNMDKQTN  420
TADMLDLAVE YIKDLQKKVE NLNDNRAKCT CS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU9763971e-58KU976397.1 Hylocereus undatus HubHLH1-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673593.10.0PREDICTED: transcription factor bHLH130
TrEMBLA0A0K9S2430.0A0A0K9S243_SPIOL; Uncharacterized protein
STRINGXP_010673593.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-55bHLH family protein