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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Bv4_072260_cjxc.t1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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| Family | Nin-like | ||||||||
| Protein Properties | Length: 275aa MW: 30071.5 Da PI: 8.2108 | ||||||||
| Description | Nin-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | RWP-RK | 56.4 | 5.9e-18 | 13 | 58 | 3 | 48 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48
+++s+e++sk Fslp+ +AA Lgv+ +vLK+ C ++G++RWPhRk
Bv4_072260_cjxc.t1 13 QSVSFEHVSKLFSLPLSEAADILGVSSSVLKKLCNENGLQRWPHRK 58
6899*****************************************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51519 | 14.3 | 1 | 83 | IPR003035 | RWP-RK domain |
| Pfam | PF02042 | 8.9E-17 | 15 | 59 | IPR003035 | RWP-RK domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 275 aa Download sequence Send to blast |
MSLGPNQKSS IDQSVSFEHV SKLFSLPLSE AADILGVSSS VLKKLCNENG LQRWPHRKFL 60 AGKNIEEIKK EAAELKSKAV GGISPTSDVT TASSTTTSPG SHIKDKSPRS ALEMSKSQGS 120 TQEPGSKTTI TWRTHHVLAS GLASETNTFS DEFKYGFPSG GLSECSNRWW RSSFDGNDTK 180 TSSKIEDITK VQADGGISSI CEEKANNATR ESECDNKQDE VSECDKQNEV SLSAVRKRAL 240 EEGKEALKFR ALKKYGADKL GNEEKILLRR LYQTS |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010673598.1 | 0.0 | PREDICTED: protein NLP9 | ||||
| TrEMBL | A0A0K9S245 | 3e-90 | A0A0K9S245_SPIOL; Uncharacterized protein | ||||
| STRING | XP_010673598.1 | 0.0 | (Beta vulgaris) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G74480.1 | 1e-09 | RWP-RK domain-containing protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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