PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv4_072350_apsk.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

C2H2

Protein Properties

Length: 413aa MW: 47209.7 Da PI: 7.4622

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv4_072350_apsk.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.00019	250	269	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C ++F+r n++ H+ Bv4_072350_apsk.t1 250 FSCPLCFRTFNRYNNMQMHM 269 89*****************9 PP
2	zf-C2H2	12.7	0.00038	334	354	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 + C +Cgk+F + + ++H + Bv4_072350_apsk.t1 334 FACRKCGKPFAVRGDWRTHEK 354 78*****************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	1.1	250	272	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.473	250	277	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.6E-4	250	269	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	252	272	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.17E-6	316	354	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.0E-5	321	354	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	78	334	354	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	180	360	383	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MSDNPYFNHH HHHHHYATGF LNSSNYPSFN HFFPTTNNNN FSTLSNNNNN NNNNPYDYNF 60 FFSNTFINNN NNTSQDFNIS SKSPPSPPLR EALPLFSSSP VRNNNNNYHI NLNEDDYCNN 120 NNNSNEDQFE EFSSTTLHLG LPSCSAADLI SASLSSSSTT SDHHHMMNNN HSNNNNNNKK 180 CMNNNMMMMM MMNNEDSSRS EEVTVASSYN NNNNNNSSLI GGYCNSIGTV NKGQYWIPTP 240 AQILIGPTQF SCPLCFRTFN RYNNMQMHMW GHGSQYRKGP ESLRGTQPTA MLRLPCYCCA 300 PGCRNNIDHP RAKPLKDFRT LQTHYKRKHG IKPFACRKCG KPFAVRGDWR THEKNSGKLW 360 YCTCGSDFKH KRSLKDHIKS FGHGHAPYGI DCFDEEDEPA SEIEQDNEIE SNQ

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MSDNPYFNHH HHHHHYATGF LNSSNYPSFN HFFPTTNNNN FSTLSNNNNN NNNNPYDYNF  60
FFSNTFINNN NNTSQDFNIS SKSPPSPPLR EALPLFSSSP VRNNNNNYHI NLNEDDYCNN  120
NNNSNEDQFE EFSSTTLHLG LPSCSAADLI SASLSSSSTT SDHHHMMNNN HSNNNNNNKK  180
CMNNNMMMMM MMNNEDSSRS EEVTVASSYN NNNNNNSSLI GGYCNSIGTV NKGQYWIPTP  240
AQILIGPTQF SCPLCFRTFN RYNNMQMHMW GHGSQYRKGP ESLRGTQPTA MLRLPCYCCA  300
PGCRNNIDHP RAKPLKDFRT LQTHYKRKHG IKPFACRKCG KPFAVRGDWR THEKNSGKLW  360
YCTCGSDFKH KRSLKDHIKS FGHGHAPYGI DCFDEEDEPA SEIEQDNEIE SNQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010673606.2	0.0	PREDICTED: zinc finger protein WIP2
Swissprot	Q9SVY1	1e-128	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A1R3I6D5	1e-149	A0A1R3I6D5_9ROSI; Uncharacterized protein
STRING	XP_010673606.1	1e-165	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-125	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]