PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_073910_eape.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 231aa    MW: 26302.1 Da    PI: 7.5498
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_073910_eape.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-16120169355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y GVr+++ +gr++AeIrdp   + k  r++lg++ ta +Aa+a+++a+  ++g
  Bv4_073910_eape.t1 120 YIGVRRRP-WGRFAAEIRDP---KrKGYRIWLGTYNTAIDAARAYDRAAFDMRG 169
                         88******.**********8...3334***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.4E-30119178IPR001471AP2/ERF domain
SMARTSM003801.4E-31119183IPR001471AP2/ERF domain
PROSITE profilePS5103222.405119177IPR001471AP2/ERF domain
PRINTSPR003672.6E-11120131IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-22120179IPR016177DNA-binding domain
PfamPF008478.7E-12120169IPR001471AP2/ERF domain
CDDcd000184.83E-17120178No hitNo description
PRINTSPR003672.6E-11159179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
METLAPDTAT ALNLIEKHLF DDQIPSPTST ITTTLSSKSS FTTNQYSQNN TKVTTFNLCF  60
SNNNEGTRHD DSNILQYIYS SLEEAGIDYD ETFRVFCSKP RKAATKGDMK HNNNNNHGNY  120
IGVRRRPWGR FAAEIRDPKR KGYRIWLGTY NTAIDAARAY DRAAFDMRGN KARLNFPHEV  180
GSWSSSSTKT TQMQLIGEKR QRIEEDEIDM LGDYCSSDDD GQLNIKFPKL V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-261171791274Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673999.21e-175PREDICTED: ethylene-responsive transcription factor ERF107
TrEMBLA0A0K9RFZ35e-69A0A0K9RFZ3_SPIOL; Uncharacterized protein
STRINGXP_010673999.11e-175(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.14e-21ethylene-responsive element binding factor 13