PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_073920_ryre.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 233aa    MW: 26565.2 Da    PI: 7.6922
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_073920_ryre.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.5e-15121170355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y GVr+++ +gr++AeIrdp   + k  r++lg++  a +Aa+a+++a+  ++g
  Bv4_073920_ryre.t1 121 YIGVRRRP-WGRFAAEIRDP---KrKGYRIWLGTYNKAIDAARAYDRAAFDIRG 170
                         89******.**********8...3334**********************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.00E-16119179No hitNo description
SMARTSM003804.5E-30120184IPR001471AP2/ERF domain
PROSITE profilePS5103221.812120178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-29120179IPR001471AP2/ERF domain
PfamPF008474.3E-10121170IPR001471AP2/ERF domain
PRINTSPR003673.0E-11121132IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-21121180IPR016177DNA-binding domain
PRINTSPR003673.0E-11160180IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEPLLPNTIA ALQDIEQHLF EDYHLPLSPI STTNFDSTTP SFTSQLYPQN NNNAKVTTFT  60
ISFSNEDRCH SNNDPLLEYI YSSLEDQGID YDETFRIFCS KPPQKVATKY EASHNNNQAN  120
YIGVRRRPWG RFAAEIRDPK RKGYRIWLGT YNKAIDAARA YDRAAFDIRG NKARLNFPHE  180
VGSWSSSSSS SSSSSSSSKT TQVHHAGDKR LRNDDIEKFI DDQLINKMPR SSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-24120183568ATERF1
3gcc_A6e-24120183568ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674000.11e-175PREDICTED: ethylene-responsive transcription factor ERF107
TrEMBLA0A0K9RFZ35e-58A0A0K9RFZ3_SPIOL; Uncharacterized protein
STRINGXP_010674000.11e-174(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-21ethylene-responsive element binding factor 13