PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_074790_jcpm.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family AP2
Protein Properties Length: 715aa    MW: 77866.4 Da    PI: 6.5603
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_074790_jcpm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.8e-15280339155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Bv4_074790_jcpm.t1 280 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 339
                         57*******************666664478446*************************98 PP
2AP246.68.2e-15382433155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Bv4_074790_jcpm.t1 382 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 433
                         57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-11280339IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-17280348IPR016177DNA-binding domain
CDDcd000181.91E-20280349No hitNo description
SMARTSM003802.7E-29281353IPR001471AP2/ERF domain
PROSITE profilePS5103219.164281347IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-15281347IPR001471AP2/ERF domain
PRINTSPR003677.7E-6282293IPR001471AP2/ERF domain
PfamPF008471.0E-9382433IPR001471AP2/ERF domain
CDDcd000184.66E-25382443No hitNo description
SuperFamilySSF541711.77E-17382442IPR016177DNA-binding domain
PROSITE profilePS5103219.177383441IPR001471AP2/ERF domain
SMARTSM003802.7E-33383447IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-18383441IPR001471AP2/ERF domain
PRINTSPR003677.7E-6423443IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MNWLGFSLSP QELPSQTPDH GSNQDHHHHH FTSNNNGECF DLGPGSTPHS SLNHIPSSFG  60
ILEAFHRSTN DQSQDWNNMK GNSELSMLMG NQEVEEEPKL ENFLGSSHSF RENHHQNNGD  120
LYMFNTTHDN NNNSTMSNPK DITSPASNNN NNNNNGLNVS MIKTWLRSNH PPQSNIVDGG  180
GGSGGGGANA QTLSLSMGTG VSQSALPLLA AGGGGGGGGG EIESSLSENS SSNNKQQLSD  240
TTAGICNNTA STITAIVDVQ SSALESVPRK SIDTFGQRTS IYRGVTRHRW TGRYEAHLWD  300
NSCRREGQTR KGRQVYLGGY DKEEKAARAY DLAALKYWGT TTTTNFPITD YEKEVEDMKH  360
MTRQEYVASL RRKSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA  420
AEAYDIAAIK FRGLNAVTNF EINRYDVKAI LDSTTLPIGG AAKRLKDVED LTTITPDKQI  480
IRAITSSNDN NHENSQLTNF GNGTPNFHSW PGIAFPQAQP LAMHYPYATS QQQQQQQQRF  540
WCKQEVQDTT NDYQDHLNQQ LQMNNGTHNF FQMHNLMGLE NSSTSLEHSS GSNSVVYGNG  600
NGNGNGNDHG VGNGYGLPFG MSTVIAHDGN GNGSGNGNEQ SGYENYYYLS HQGNNNNHGN  660
AAGVRGAVGT YDQGSACNNW VPTAIPTLVP RPNNMAAVGG HGGGGIPTFT VWNDT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674006.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM
SwissprotQ8LSN21e-144BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2I4E4460.0A0A2I4E446_JUGRE; AP2-like ethylene-responsive transcription factor BBM
STRINGXP_010674006.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-129AP2 family protein