PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_075180_sasn.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 459aa    MW: 49861.9 Da    PI: 8.1135
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_075180_sasn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.4e-127398227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                        +++ C+f++rtG C++G++C+F+H+p
  Bv4_075180_sasn.t1 73 GEADCSFYLRTGLCRFGSTCRFNHPP 98
                        6789********************97 PP
2zf-CCCH40.25.5e-13118143227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C+++++tGtCk+G++CkF+H++
  Bv4_075180_sasn.t1 118 GQPECQYYLKTGTCKFGATCKFNHPK 143
                         5799********************96 PP
3zf-CCCH37.83.2e-12165189327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C +++rtG+Ck+G++CkF+H++
  Bv4_075180_sasn.t1 165 EPECAYYLRTGQCKFGSTCKFHHPQ 189
                         799********************97 PP
4zf-CCCH37.83.2e-12320346127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C+++++tG Ck+G+ C+F+H++
  Bv4_075180_sasn.t1 320 PGQPECQYYMKTGDCKFGAVCRFHHPR 346
                         5789*********************96 PP
5zf-CCCH406.4e-13366392127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++lC f++r+G+Ck+G++CkF H++
  Bv4_075180_sasn.t1 366 PGEPLCIFYSRYGICKFGPNCKFDHPM 392
                         589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5967199IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-67198IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-97398IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-57699IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-47797IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6116143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.647116144IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-10118143IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6120145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-5122142IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-6162189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817162190IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6165190IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-10165189IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4168188IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-6319346IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.493319347IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-9321346IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-6323349IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-5325347IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-7365392IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84365393IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10367392IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-5368392IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4370390IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MAFRDVVVVV GNNNGDDDDD AAGISISRPS AVAVNSGSSS LLDEDSMWQV NMRSTEAMDT  60
GIYPPGPYPE REGEADCSFY LRTGLCRFGS TCRFNHPPNR KLALATARMK GEFPERTGQP  120
ECQYYLKTGT CKFGATCKFN HPKDKAGIAG RVPLNVLGYP LRPNEPECAY YLRTGQCKFG  180
STCKFHHPQP SASFRGSSVY PPVQSPTTPG QQSYPGGGLT NWPLSRASII PSPRWQGPSS  240
YTPMILPQGV VSVPGWNAYM GQMGSDGQQQ TPGNSPGYGT ARQSESPVSA SQGAYSSYRS  300
GSVPVGYYAL QRDNVFPERP GQPECQYYMK TGDCKFGAVC RFHHPRERLI PAPDCLLSAL  360
GLPLRPGEPL CIFYSRYGIC KFGPNCKFDH PMGIFAYNVS PTATDASAMR RYLGSSSASG  420
GLTLTSEGLV ESGPGKNRRL TLSETRDIQS SDDNIETDR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673925.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A0K9QBJ80.0A0A0K9QBJ8_SPIOL; Uncharacterized protein
STRINGXP_010673925.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-165zinc finger protein 1