PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_076560_kwrn.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GATA
Protein Properties Length: 146aa    MW: 16757.8 Da    PI: 9.4017
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_076560_kwrn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.15.9e-19841134
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                        C  C+ttkTplWR gp g+++LCnaCG++yrk++
  Bv4_076560_kwrn.t1  8 CGDCKTTKTPLWRTGPHGPRSLCNACGIRYRKRK 41
                        99******************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.3E-15252IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.38E-13445No hitNo description
Gene3DG3DSA:3.30.50.104.2E-16643IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.62E-13741No hitNo description
PfamPF003205.7E-17840IPR000679Zinc finger, GATA-type
PROSITE patternPS003440833IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.268838IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MNEVKKFCGD CKTTKTPLWR TGPHGPRSLC NACGIRYRKR KMSEDKQPSS EIRRLEKTCS  60
SRSYDYEYDY QMNEYIKMRY NYSDLSNNNM FVQRSTISSS SSSSSSQFKK QRSSSEESIS  120
SDNRKLGEVE QAAILLMSLS CGSVFA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674149.11e-104PREDICTED: GATA transcription factor 16
TrEMBLA0A0K9QV178e-43A0A0K9QV17_SPIOL; Uncharacterized protein
STRINGXP_010674149.11e-103(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.16e-23GATA transcription factor 16