PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_077700_pxuq.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ZF-HD
Protein Properties Length: 209aa    MW: 23501.4 Da    PI: 7.7662
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_077700_pxuq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer91.48.3e-292071358
         ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                         v YkeClkNhAa+lGgh++DGCgE+m+s    ++ ++l C+ACgCHRnFHR+ev+
  Bv4_077700_pxuq.t1 20 VVLYKECLKNHAAALGGHSTDGCGEYMAS----SSDDTLFCSACGCHRNFHRKEVD 71
                        589*************************9....5568****************986 PP
2Homeobox16.91.1e-05130185152
                         TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 
                         +r Rt+ft++q e++  + +    k +++++e+ ++  +++g++ r+ k+W +N +
  Bv4_077700_pxuq.t1 130 KRYRTRFTNDQKERMLGFAQkagwKIQKLDEESVQQFCQEVGIKRRVLKIWMHNNK 185
                         799************98777777779****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.1E-242170IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-152171IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.9932369IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.7E-252370IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.1E-27116190IPR009057Homeodomain-like
SuperFamilySSF466891.41E-19119188IPR009057Homeodomain-like
TIGRFAMsTIGR015653.9E-26129185IPR006455Homeodomain, ZF-HD class
CDDcd000860.00984130183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MNESSTQAGD INSKSKGMVV VLYKECLKNH AAALGGHSTD GCGEYMASSS DDTLFCSACG  60
CHRNFHRKEV DMGGASHTNL PEYLFWCNTS IVPKNQVLEC QEKEGVIPAA TTSENEGEQT  120
KVEGNINSKK RYRTRFTNDQ KERMLGFAQK AGWKIQKLDE ESVQQFCQEV GIKRRVLKIW  180
MHNNKHLFAK KITNSSLDEL HDASDYSNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A1e-221291861774ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674293.11e-158PREDICTED: zinc-finger homeodomain protein 1
SwissprotQ9M9S09e-50ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A371HZK32e-57A0A371HZK3_MUCPR; Zinc-finger homeodomain protein 4 (Fragment)
STRINGXP_010674293.11e-157(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.24e-52homeobox protein 31