PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_078450_axad.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family M-type_MADS
Protein Properties Length: 77aa    MW: 8519.72 Da    PI: 9.7983
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_078450_axad.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF337.5e-113476345
                        --SHHHHHHHHHHHHHHHHHH.HHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  3 ienksnrqvtfskRrngilKK.AeELSvLCdaevaviifsstgk 45
                        i +k+ +qvtfs+Rr g+lK  A+E S LC+a va i fss g+
  Bv4_078450_axad.t1 34 IPSKICKQVTFSRRRSGLLKNdASESSSLCGA-VAAITFSSAGE 76
                        789999**************66*********8.77788998885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.2742477IPR002100Transcription factor, MADS-box
SMARTSM004326.9E-42477IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-102576IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-52646IPR002100Transcription factor, MADS-box
PfamPF003193.3E-83475IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-54661IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-56177IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MANHEEPKFP VSHEDYNLQQ KKKTGKRKIE IIPIPSKICK QVTFSRRRSG LLKNDASESS  60
SLCGAVAAIT FSSAGEE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674587.11e-24PREDICTED: agamous-like MADS-box protein AGL28
STRINGXP_010674587.14e-24(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-10AGAMOUS-like 62