PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_079320_gsmr.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 683aa    MW: 73844.5 Da    PI: 6.9389
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_079320_gsmr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.1e-16443489455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Bv4_079320_gsmr.t1 443 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 489
                         6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.77E-17435493No hitNo description
Gene3DG3DSA:4.10.280.104.8E-20436497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-20436502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.228439488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-13443489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-17445494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MPLTELVRMF KGKVEVNQDG VSNSIDPSSR PNTDCVELVW ENGQLMMQGK TRKSSNSNNF  60
QTVGPKLQDG RNVGNFSRMT KFGTMDSLMA DYPLSVPSCE MGLDQDVDLV PWLNYPMEEH  120
LHNDYTSDFL HELSGVTIND LSTENHLPYR ERKSTFHGDG HDTSVSLKHG HTSKASSSFE  180
KDNRGGSSEV PQFMFPFQQS IPRSGISDII GNSAGNAHHV ASRDSANNPS SLSAFTSLRL  240
QKLDAGQPST SSGFTNFPYF SRPTGLSRAN QVTVNPSKRL ENIDKRCTLN SSNPANSTLV  300
NMDSGYSQKD IVSHNQSIMT PANRDSEALP AKPTQEPRSA DQPMDREDIA KNHVSKNQAC  360
DAPMSKVGTS GDRNMEPVVA TSSVCSANSA ERTSDEPARN LKRKSHDTTE SEGPSEEAEE  420
ESVGARKAGH GRNGSKRSRA AEVHNLSERR RRDRINEKMR ALQELIPNCN KADKASMLDE  480
AIEYLKTLQI QVQILSMGAG LYMQPMMLPP GMQPIHGAHM PHFSPMGLGM GMGMGFGMNM  540
LNMNNGPKML PFQGPHYPVP GTGFQGMPGS NLPAFPHPGQ VLPMSMQQAP IVPPPISGSF  600
LNMPIGLPAS GVAGPSSAPQ LAPPGSKKDA NPHGLSSMAS NNVKSSLNPA TIQGSNEGNQ  660
VCHDQTQAVN AVETASGKDA MHS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1401405KRKSH
2447452ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019104506.10.0PREDICTED: transcription factor PIF3 isoform X1
RefseqXP_019104507.10.0PREDICTED: transcription factor PIF3 isoform X1
RefseqXP_019104508.10.0PREDICTED: transcription factor PIF3 isoform X1
TrEMBLA0A0K9RD810.0A0A0K9RD81_SPIOL; Uncharacterized protein
STRINGXP_010674470.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.27e-37phytochrome interacting factor 3