PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_079320_gsmr.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 675aa    MW: 72904.4 Da    PI: 6.9387
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_079320_gsmr.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.15.1e-16435481455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Bv4_079320_gsmr.t2 435 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 481
                         6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.70E-17427485No hitNo description
Gene3DG3DSA:4.10.280.104.8E-20428489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-20428494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.228431480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-13435481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-17437486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MFKGKVEVNQ DGVSNSIDPS SRPNTDCVEL VWENGQLMMQ GKTRKSSNSN NFQTVGPKLQ  60
DGRNVGNFSR MTKFGTMDSL MADYPLSVPS CEMGLDQDVD LVPWLNYPME EHLHNDYTSD  120
FLHELSGVTI NDLSTENHLP YRERKSTFHG DGHDTSVSLK HGHTSKASSS FEKDNRGGSS  180
EVPQFMFPFQ QSIPRSGISD IIGNSAGNAH HVASRDSANN PSSLSAFTSL RLQKLDAGQP  240
STSSGFTNFP YFSRPTGLSR ANQVTVNPSK RLENIDKRCT LNSSNPANST LVNMDSGYSQ  300
KDIVSHNQSI MTPANRDSEA LPAKPTQEPR SADQPMDRED IAKNHVSKNQ ACDAPMSKVG  360
TSGDRNMEPV VATSSVCSAN SAERTSDEPA RNLKRKSHDT TESEGPSEEA EEESVGARKA  420
GHGRNGSKRS RAAEVHNLSE RRRRDRINEK MRALQELIPN CNKADKASML DEAIEYLKTL  480
QIQVQILSMG AGLYMQPMML PPGMQPIHGA HMPHFSPMGL GMGMGMGFGM NMLNMNNGPK  540
MLPFQGPHYP VPGTGFQGMP GSNLPAFPHP GQVLPMSMQQ APIVPPPISG SFLNMPIGLP  600
ASGVAGPSSA PQLAPPGSKK DANPHGLSSM ASNNVKSSLN PATIQGSNEG NQVCHDQTQA  660
VNAVETASGK DAMHS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1393397KRKSH
2439444ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019104506.10.0PREDICTED: transcription factor PIF3 isoform X1
RefseqXP_019104507.10.0PREDICTED: transcription factor PIF3 isoform X1
RefseqXP_019104508.10.0PREDICTED: transcription factor PIF3 isoform X1
TrEMBLA0A0K9RD810.0A0A0K9RD81_SPIOL; Uncharacterized protein
STRINGXP_010674470.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.26e-37phytochrome interacting factor 3